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SCNpilot_cont_500_bf_scaffold_786_curated

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_786_curated_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..193)
DNA (192bp) protein (64aa)
cytochrome bd ubiquinol oxidase, subunit I; K00425 cytochrome d ubiquinol oxidase subunit I [EC:1.10.3.-]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P0Z2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34409.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_cont_500_bf_scaffold_786_curated_2
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

639..1613
DNA (975bp) protein (325aa)
Peptide ABC transporter solute-binding protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HXM7_9RHIZ
Peptide ABC transporter solute-binding protein {ECO:0000313|EMBL:EHK54504.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
peptide ABC transporter substrate-binding protein
SCNpilot_cont_500_bf_scaffold_786_curated_3
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1686..2207
DNA (522bp) protein (174aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HXM6_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK54503.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
tripartite AtP-independent periplasmic transporter subunit DctQ
SCNpilot_cont_500_bf_scaffold_786_curated_4
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2217..3527
DNA (1311bp) protein (437aa)
TRAP C4-dicarboxylate transport (Dct) system permease DctM subunit n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HXM5_9RHIZ
C4-dicarboxylate ABC transporter permease {ECO:0000313|EMBL:KJS19131.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
TRAP dicarboxylate transporter subunit DctM
SCNpilot_cont_500_bf_scaffold_786_curated_5
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3524..4462
DNA (939bp) protein (313aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HXM4_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK54501.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_786_curated_6
unknown

Not on your lists

4607..4798
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_786_curated_7
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4895..5251
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00037D7224
Photosystem reaction center subunit H {ECO:0000313|EMBL:KHJ52981.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
PRC-barrel domain-containing protein
SCNpilot_cont_500_bf_scaffold_786_curated_8
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5468..6214)
DNA (747bp) protein (249aa)
phosphoadenosine phosphosulfate reductase; K00390 phosphoadenosine phosphosulfate reductase [EC:1.8.4.8]
Phosphoadenosine phosphosulfate reductase {ECO:0000255|HAMAP-Rule:MF_00063}; EC=1.8.4.8 {ECO:0000255|HAMAP-Rule:MF_00063};; 3'-phosphoadenylylsulfate reductase {ECO:0000255|HAMAP-Rule:MF_00063}; PAPS reductase, thioredoxin dependent {ECO:0000255|HAMAP-Rule:MF_00063}; PAPS sulfotransferase {ECO:0000255|HAMAP-Rule:MF_00063}; PAdoPS reductase {ECO:0000255|HAMAP-Rule:MF_00063}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativ
Phosphoadenosine phosphosulfate reductase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=CYSH_MESSB rbh
SCNpilot_cont_500_bf_scaffold_786_curated_9
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6189..6875)
DNA (687bp) protein (229aa)
sulfite reductase (ferredoxin) (EC:1.8.7.1); K00381 sulfite reductase (NADPH) hemoprotein beta-component [EC:1.8.1.2]
Sulfite reductase (Ferredoxin) {ECO:0000313|EMBL:ACS56110.1}; EC=1.8.7.1 {ECO:0000313|EMBL:ACS56110.1};; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
sulfite reductase n=1 Tax=Rhizobium leguminosarum RepID=UPI0003609E3D
SCNpilot_cont_500_bf_scaffold_786_curated_10
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6898..8325)
DNA (1428bp) protein (476aa)
uroporphyrin-III C-methyltransferase; K02302 uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase [EC:2.1.1.107 1.3.1.76 4.99.1.4]
UPI0003CFA314 related cluster n=1 Tax=unknown RepID=UPI0003CFA314
Siroheme synthase {ECO:0000313|EMBL:ESZ22199.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
SCNpilot_cont_500_bf_scaffold_786_curated_11
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8563..9018
DNA (456bp) protein (152aa)
UPI0003CDF69D related cluster n=1 Tax=unknown RepID=UPI0003CDF69D
host attachment protein
Host attachment protein {ECO:0000313|EMBL:ESY77765.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
SCNpilot_cont_500_bf_scaffold_786_curated_12
Pseudooceanicola atlanticus, Pseudooceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9169..10008)
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI00036FF096
Hydrolase {ECO:0000313|EMBL:KGM49222.1}; TaxID=1461694 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola sp. 22II-S11g.;"
hydrolase
SCNpilot_cont_500_bf_scaffold_786_curated_13
Oceanibulbus indolifex, Oceanibulbus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10005..11114)
DNA (1110bp) protein (370aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9DUD9_9RHOB
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EDQ06843.1}; TaxID=391624 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanibulbus.;" source="Oceanibulbus indolifex HEL-45.;"
putative amino acid or sugar ABC transport system, permease protein
SCNpilot_cont_500_bf_scaffold_786_curated_14
Sulfitobacter mediterraneus, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11111..12112)
DNA (1002bp) protein (334aa)
ABC transporter permease n=1 Tax=Oceanicola sp. S124 RepID=UPI0002557985
ABC transporter permease {ECO:0000313|EMBL:KAJ02525.1}; TaxID=83219 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter mediterraneus.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
SCNpilot_cont_500_bf_scaffold_786_curated_15
Sulfitobacter mediterraneus, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12121..12849)
DNA (729bp) protein (243aa)
ABC transporter related protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3V9N9_9RHOB
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KAJ02526.1}; TaxID=83219 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter mediterraneus.;"
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_786_curated_16
Oceanibulbus indolifex, Oceanibulbus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12846..13610)
DNA (765bp) protein (255aa)
h16_A2256; ABC transporter ATPase (EC:3.6.3.22); K01995 branched-chain amino acid transport system ATP-binding protein
ABC transporter related protein n=1 Tax=Oceanibulbus indolifex HEL-45 RepID=A9DUE5_9RHOB
ABC transporter related protein {ECO:0000313|EMBL:EDQ06846.1}; TaxID=391624 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanibulbus.;" source="Oceanibulbus indolifex HEL-45.;"
SCNpilot_cont_500_bf_scaffold_786_curated_17
Thioclava sp. DT23-4, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13713..14909)
DNA (1197bp) protein (399aa)
Branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3V9N7_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KEO53196.1}; TaxID=1353528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. DT23-4.;"
branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein
SCNpilot_cont_500_bf_scaffold_786_curated_18
Oceanicola batsensis, Oceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14944..15219)
DNA (276bp) protein (92aa)
AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
Putative long-chain-fatty-acid CoA ligase n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3U290_9RHOB
Putative long-chain-fatty-acid CoA ligase {ECO:0000313|EMBL:EAQ01690.1}; TaxID=252305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola batsensis (strain ATCC BAA-863 / DSM 15984 / HTCC2597).;"
SCNpilot_cont_500_bf_scaffold_786_curated_19
unknown

Not on your lists

15868..16692
DNA (825bp) protein (275aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_786_curated_20
Thioclava sp. DT23-4, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16632..17186
DNA (555bp) protein (185aa)
Transcriptional regulator, LuxR family/sensory box protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3V9N6_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KEO53195.1}; TaxID=1353528 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. DT23-4.;"
LuxR family transcriptional regulator
SCNpilot_cont_500_bf_scaffold_786_curated_21
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17215..18459)
DNA (1245bp) protein (415aa)
sphingosine-1-phosphate lyase; K01634 sphinganine-1-phosphate aldolase [EC:4.1.2.27]
Putative sphingosine-1-phosphate lyase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RF80_PHEZH
Uncharacterized protein {ECO:0000313|EMBL:KGF69049.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
SCNpilot_cont_500_bf_scaffold_786_curated_22
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18484..19209)
DNA (726bp) protein (242aa)
Transcriptional regulator, GntR family n=1 Tax=Variovorax paradoxus B4 RepID=T1XKV0_VARPD
transcriptional regulator, GntR family
Putative GntR transcriptional regulator {ECO:0000313|EMBL:CCM80266.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
SCNpilot_cont_500_bf_scaffold_786_curated_23
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19327..20157
DNA (831bp) protein (277aa)
ABC transporter related protein n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3JAN5_FRASU
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
ABC transporter related protein {ECO:0000313|EMBL:ADP82227.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
SCNpilot_cont_500_bf_scaffold_786_curated_24
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20154..20975
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Actinomadura flavalba RepID=UPI0003737A68
binding-protein-dependent transport system inner membrane protein; K02050 NitT/TauT family transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADP82226.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
SCNpilot_cont_500_bf_scaffold_786_curated_25
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20989..21999
DNA (1011bp) protein (337aa)
Uncharacterized protein n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3JAN6_FRASU
hypothetical protein; K02051 NitT/TauT family transport system substrate-binding protein
Uncharacterized protein {ECO:0000313|EMBL:ADP82228.1}; Flags: Precursor;; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
SCNpilot_cont_500_bf_scaffold_786_curated_26
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22108..22890)
DNA (783bp) protein (261aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Nitratireductor indicus C115 RepID=K2N9P5_9RHIZ
Protein FixR {ECO:0000313|EMBL:CDX24011.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_500_bf_scaffold_786_curated_27
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22967..25234)
DNA (2268bp) protein (756aa)
Penicillin-binding protein, 1A family n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TCM2_MESCW
Penicillin-binding protein {ECO:0000313|EMBL:EZQ16295.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
penicillin-binding protein
SCNpilot_cont_500_bf_scaffold_786_curated_28
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25447..26055
DNA (609bp) protein (203aa)
Transcriptional regulatory protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89H52_BRADU
Transcriptional regulatory protein {ECO:0000313|EMBL:BAR54177.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
transcriptional regulator
SCNpilot_cont_500_bf_scaffold_786_curated_29
unknown

Not on your lists

26052..26321
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Amycolatopsis nigrescens RepID=UPI0003647AF2
SCNpilot_cont_500_bf_scaffold_786_curated_30
Streptomyces sp. AA4, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26318..27745
DNA (1428bp) protein (476aa)
hypothetical protein n=1 Tax=Amycolatopsis nigrescens RepID=UPI00036CD9D3
Predicted protein {ECO:0000313|EMBL:EFL07786.1}; TaxID=591158 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AA4.;"
SSS family transporter
Displaying items 1-30 of 36 in total

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