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SCNpilot_cont_500_bf_scaffold_402_curated

Search features with annotation key words

Displaying items 1-30 of 109 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_402_curated_1
Mesorhizobium sp. LNHC209A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..119
DNA (117bp) protein (39aa)
50S ribosomal protein L15 n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KPG6_MESAW
ribosomal protein L15, bacterial/organelle
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1287226 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC209A00.;"
SCNpilot_cont_500_bf_scaffold_402_curated_2
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


247..1587
DNA (1341bp) protein (447aa)
UPI0003D06B4D related cluster n=1 Tax=unknown RepID=UPI0003D06B4D
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
preprotein translocase, SecY subunit
SCNpilot_cont_500_bf_scaffold_402_curated_3
Brucella suis, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1584..2168
DNA (585bp) protein (195aa)
adk; adenylate kinase (EC:2.7.4.3); K00939 adenylate kinase [EC:2.7.4.3]
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=520489 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="
Adenylate kinase n=63 Tax=Brucella RepID=KAD_BRUC2 rbh
SCNpilot_cont_500_bf_scaffold_402_curated_4
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2531..2743
DNA (213bp) protein (71aa)
30S ribosomal protein S13 n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000301C497
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
30S ribosomal protein S13; K02952 small subunit ribosomal protein S13
SCNpilot_cont_500_bf_scaffold_402_curated_5
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3092..3247
DNA (156bp) protein (52aa)
PREDICTED: 30S ribosomal protein S11, chloroplastic-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C14663
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
SCNpilot_cont_500_bf_scaffold_402_curated_6
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3355..4365
DNA (1011bp) protein (337aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
DNA-directed RNA polymerase subunit alpha n=1 Tax=Nitratireductor indicus C115 RepID=K2NR51_9RHIZ
SCNpilot_cont_500_bf_scaffold_402_curated_7
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4411..4842
DNA (432bp) protein (144aa)
50S ribosomal protein L17 n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2N2C5_9RHIZ
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
SCNpilot_cont_500_bf_scaffold_402_curated_8
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5021..6466
DNA (1446bp) protein (482aa)
Alkaline phosphatase {ECO:0000313|EMBL:CDP50830.1}; EC=3.1.3.1 {ECO:0000313|EMBL:CDP50830.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
alkaline phosphatase; K01077 alkaline phosphatase [EC:3.1.3.1]
Alkaline phosphatase n=5 Tax=Escherichia coli RepID=L2W454_ECOLX
SCNpilot_cont_500_bf_scaffold_402_curated_9
unknown

Not on your lists

comp(6473..6895)
DNA (423bp) protein (141aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_402_curated_10
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6899..7279)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Magnetospirillum sp. SO-1 RepID=M3A8I6_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EME69093.1}; TaxID=1244869 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_402_curated_11
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8142..9461
DNA (1320bp) protein (440aa)
UPI0003CDD238 related cluster n=1 Tax=unknown RepID=UPI0003CDD238
ATPase AAA {ECO:0000313|EMBL:ESY82881.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
AAA ATPase central domain-containing protein; K07478 putative ATPase
SCNpilot_cont_500_bf_scaffold_402_curated_12
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9487..9912)
DNA (426bp) protein (142aa)
drug:proton antiporter n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F1388D
Drug:proton antiporter {ECO:0000313|EMBL:EZQ16662.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_402_curated_13
unknown

Not on your lists

10031..10246
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_402_curated_14
unknown

Not on your lists

10357..11625
DNA (1269bp) protein (423aa)
Uncharacterized protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C7K3_9RHIZ
SCNpilot_cont_500_bf_scaffold_402_curated_15
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11648..11890
DNA (243bp) protein (81aa)
Mll1244 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98L01_RHILO
Uncharacterized protein {ECO:0000313|EMBL:CDX29435.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_402_curated_16
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11938..12924)
DNA (987bp) protein (329aa)
methyltetrahydrofolate:corrinoid methyltransferase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F6861F
Methyltetrahydrofolate:corrinoid methyltransferase {ECO:0000313|EMBL:EXL09875.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase rbh
SCNpilot_cont_500_bf_scaffold_402_curated_17
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12999..14102)
DNA (1104bp) protein (368aa)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
methylenetetrahydrofolate reductase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E5540E
methylenetetrahydrofolate reductase
SCNpilot_cont_500_bf_scaffold_402_curated_18
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14099..14746)
DNA (648bp) protein (216aa)
Methylene-tetrahydrofolate reductase-like protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000314D4D3
Putative uncharacterized protein {ECO:0000313|EMBL:EHK56145.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_402_curated_19
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14739..15041)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5ETG2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV07552.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_402_curated_20
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15149..16774)
DNA (1626bp) protein (542aa)
Microcin C ABC transporter ATP-binding protein YejF n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FGJ6_9RHIZ
Microcin C ABC transporter ATP-binding protein YejF {ECO:0000313|EMBL:ESX74143.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
ABC transporter ATP-binding protein; K02031 peptide/nickel transport system ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein rbh
SCNpilot_cont_500_bf_scaffold_402_curated_21
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16771..17643)
DNA (873bp) protein (291aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HSV6_9RHIZ
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EHK56182.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ABC-type dipeptide/oligopeptide/nickel transport system, permease component
SCNpilot_cont_500_bf_scaffold_402_curated_22
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17640..18587)
DNA (948bp) protein (316aa)
peptide ABC transporter n=1 Tax=Rhizobium loti RepID=UPI00036536BC
Binding--dependent transport system inner membrane component family protein {ECO:0000313|EMBL:AID30643.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
ABC-type dipeptide/oligopeptide/nickel transport system, permease component
SCNpilot_cont_500_bf_scaffold_402_curated_23
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18665..20146)
DNA (1482bp) protein (494aa)
ABC transporter substrate-binding protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002ED3D63
Extracellular solute-binding protein family 5 {ECO:0000313|EMBL:CDX29344.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
family 5 extracellular solute-binding protein
SCNpilot_cont_500_bf_scaffold_402_curated_24
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20261..21115)
DNA (855bp) protein (285aa)
acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase; K01439 succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
UPI0003CE7D50 related cluster n=1 Tax=unknown RepID=UPI0003CE7D50
Succinyl-diaminopimelate desuccinylase {ECO:0000313|EMBL:ESW86136.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
SCNpilot_cont_500_bf_scaffold_402_curated_25
unknown

Not on your lists

21260..21694
DNA (435bp) protein (145aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_402_curated_26
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21760..22152
DNA (393bp) protein (131aa)
Uncharacterized protein n=6 Tax=Mesorhizobium RepID=V7F5G1_9RHIZ
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:CDX44497.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
ErfK/YbiS/YcfS/YnhG family protein
SCNpilot_cont_500_bf_scaffold_402_curated_27
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22248..25097
DNA (2850bp) protein (950aa)
molybdopterin-binding oxidoreductase; K00183 molybdopterin oxidoreductase, molybdopterin binding subunit [EC:1.2.7.-]
formate dehydrogenase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F116D7
Formate dehydrogenase {ECO:0000313|EMBL:EZQ16691.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
SCNpilot_cont_500_bf_scaffold_402_curated_28
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25094..25861
DNA (768bp) protein (256aa)
Iron-sulfur cluster-binding protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HSV0_9RHIZ
Iron-sulfur cluster-binding protein {ECO:0000313|EMBL:EHK56176.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
dmsB; 4Fe-4S ferredoxin
SCNpilot_cont_500_bf_scaffold_402_curated_29
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25865..26785
DNA (921bp) protein (307aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E1B267
DMSO reductase anchor subunit (DmsC) {ECO:0000313|EMBL:EHK56175.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
DMSO reductase chain C
SCNpilot_cont_500_bf_scaffold_402_curated_30
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26763..27389)
DNA (627bp) protein (209aa)
lipid A biosynthesis acyltransferase; K02517 lipid A biosynthesis lauroyl acyltransferase [EC:2.3.1.-]
Lipid A biosynthesis lauroyl acyltransferase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YCV0_9RHIZ
Lipid A biosynthesis lauroyl acyltransferase {ECO:0000313|EMBL:CDX44501.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
Displaying items 1-30 of 109 in total

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