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SCNpilot_cont_500_bf_scaffold_811_curated

Search features with annotation key words

Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_811_curated_1
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..506
DNA (504bp) protein (168aa)
Amino acid ABC transporter substrate-binding protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3H6F4_9RHIZ
extracellular solute-binding protein family 3
Extracellular solute-binding protein family 3 {ECO:0000313|EMBL:CDX30715.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
SCNpilot_cont_500_bf_scaffold_811_curated_2
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

508..1551
DNA (1044bp) protein (348aa)
Polar amino acid ABC transporter inner membrane protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3I3S7_9RHIZ
Polar amino acid ABC transporter inner membrane protein {ECO:0000313|EMBL:EPE94288.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
polar amino acid uptake ABC transporter, permease protein
SCNpilot_cont_500_bf_scaffold_811_curated_3
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2458..2814
DNA (357bp) protein (119aa)
2-amino-3-ketobutyrate coenzyme A ligase {ECO:0000256|HAMAP-Rule:MF_00985}; Short=AKB ligase {ECO:0000256|HAMAP-Rule:MF_00985};; EC=2.3.1.29 {ECO:0000256|HAMAP-Rule:MF_00985};; Glycine acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00985}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
2-amino-3-ketobutyrate coenzyme A ligase (EC:2.3.1.29); K00639 glycine C-acetyltransferase [EC:2.3.1.29]
2-amino-3-ketobutyrate coenzyme A ligase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HUZ0_9RHIZ
SCNpilot_cont_500_bf_scaffold_811_curated_4
CG_Proteo_01, Proteobacteria, Bacteria

Not on your lists

2893..3510
DNA (618bp) protein (206aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000366B648
coenzyme F420-dependent NADP oxidoreductase; K06988
Tax=CG_Proteo_01
SCNpilot_cont_500_bf_scaffold_811_curated_5
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3549..4583
DNA (1035bp) protein (345aa)
L-threonine 3-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00627, ECO:0000256|SAAS:SAAS00056053}; EC=1.1.1.103 {ECO:0000256|HAMAP-Rule:MF_00627, ECO:0000256|SAAS:SAAS00056053};; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
tdh; L-threonine 3-dehydrogenase (EC:1.1.1.103); K00060 threonine 3-dehydrogenase [EC:1.1.1.103] rbh
L-threonine 3-dehydrogenase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031225E5
SCNpilot_cont_500_bf_scaffold_811_curated_6
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4608..5054)
DNA (447bp) protein (149aa)
Transcriptional regulator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HUZ3_9RHIZ
Regulatory protein MarR {ECO:0000313|EMBL:KFB10922.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
transcriptional regulator
SCNpilot_cont_500_bf_scaffold_811_curated_7
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5263..6576
DNA (1314bp) protein (438aa)
Homogentisate 1,2-dioxygenase {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015626}; Short=HGDO {ECO:0000256|HAMAP-Rule:MF_00334};; EC=1.13.11.5 {ECO:0000256|HAMAP-Rule:MF_00334, ECO:0000256|SAAS:SAAS00015614};; Homogentisate oxygenase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisic acid oxidase {ECO:0000256|HAMAP-Rule:MF_00334}; Homogentisicase {ECO:0000256|HAMAP-Rule:MF_00334}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;
Homogentisate 1,2-dioxygenase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HUZ4_9RHIZ
homogentisate 1,2-dioxygenase
SCNpilot_cont_500_bf_scaffold_811_curated_8
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6573..7463
DNA (891bp) protein (297aa)
Putative hydrolase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2LIT2_9RHIZ
Putative hydrolase {ECO:0000313|EMBL:EKF17614.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hydrolase
SCNpilot_cont_500_bf_scaffold_811_curated_9
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7460..8479
DNA (1020bp) protein (340aa)
Fumarylacetoacetate (FAA) hydrolase n=1 Tax=Nitratireductor indicus C115 RepID=K2N163_9RHIZ
Fumarylacetoacetate (FAA) hydrolase {ECO:0000313|EMBL:EKF41233.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
fumarylacetoacetate (FAA) hydrolase
SCNpilot_cont_500_bf_scaffold_811_curated_10
unknown

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comp(8308..8844)
DNA (537bp) protein (179aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_811_curated_11
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8847..9797
DNA (951bp) protein (317aa)
Metallo-beta-lactamase-like protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MK62_9RHIZ
Metallo-beta-lactamase-like protein {ECO:0000313|EMBL:EKF17612.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
Metallo-beta-lactamase
SCNpilot_cont_500_bf_scaffold_811_curated_12
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9823..10368
DNA (546bp) protein (182aa)
DNA damage-inducible protein DinB n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FN82_9RHIZ
DinB family protein {ECO:0000313|EMBL:CDX60757.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
nuclease inhibitor
SCNpilot_cont_500_bf_scaffold_811_curated_13
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10368..11990
DNA (1623bp) protein (541aa)
FAD-dependent oxidoreductase; K05712 3-(3-hydroxy-phenyl)propionate hydroxylase [EC:1.14.13.127]
FAD-dependent oxidoreductase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2M669_9RHIZ
FAD-dependent oxidoreductase {ECO:0000313|EMBL:EKF17611.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_cont_500_bf_scaffold_811_curated_14
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11987..12193
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2N168_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF41238.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_811_curated_15
Sulfitobacter mediterraneus, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12345..13412
DNA (1068bp) protein (356aa)
N-carbamoyl-L-amino acid hydrolase (EC:3.5.1.87)
N-carbamoyl-L-amino acid amidohydrolase n=1 Tax=Roseovarius sp. 217 RepID=A3W0D8_9RHOB
Allantoate amidohydrolase {ECO:0000313|EMBL:KAJ03739.1}; TaxID=83219 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter mediterraneus.;"
SCNpilot_cont_500_bf_scaffold_811_curated_16
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13499..14611)
DNA (1113bp) protein (371aa)
4-hydroxyphenylpyruvate dioxygenase (EC:1.13.11.27); K00457 4-hydroxyphenylpyruvate dioxygenase [EC:1.13.11.27]
UPI0003CEA9CC related cluster n=1 Tax=unknown RepID=UPI0003CEA9CC
4-hydroxyphenylpyruvate dioxygenase {ECO:0000313|EMBL:ESY65845.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
SCNpilot_cont_500_bf_scaffold_811_curated_17
Mesorhizobium sp. LSHC412B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14921..15391
DNA (471bp) protein (157aa)
AsnC family transcriptional regulator n=1 Tax=Mesorhizobium sp. LSJC264A00 RepID=V7ETA5_9RHIZ
AsnC family transcriptional regulator {ECO:0000313|EMBL:ESX90574.1}; TaxID=1287285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC412B00.;"
transcriptional regulator AsnC-type-like protein
SCNpilot_cont_500_bf_scaffold_811_curated_18
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15462..15797)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11L76_MESSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG61849.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
PTPc superfamily protein (by NCBI conserved domain search) Rose Kantor (11/25/15)
SCNpilot_cont_500_bf_scaffold_811_curated_19
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15856..16296)
DNA (441bp) protein (147aa)
beta-lactamase n=1 Tax=Martelella mediterranea RepID=UPI000360812C
Putative enzyme with metallo-hydrolase/oxidoreductase domain (YcbL-like) {ECO:0000313|EMBL:CCD95878.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
beta-lactamase
possibly sdo Rose Kantor (11/25/15)
SCNpilot_cont_500_bf_scaffold_811_curated_20
unknown

Not on your lists

16493..16720
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_811_curated_21
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16816..17964)
DNA (1149bp) protein (383aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UFF0_METS4
CaiA protein {ECO:0000313|EMBL:BAQ48921.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
acyl-CoA dehydrogenase domain-containing protein
SCNpilot_cont_500_bf_scaffold_811_curated_22
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17979..19181)
DNA (1203bp) protein (401aa)
pimeloyl-CoA dehydrogenase, large subunit; K00257 [EC:1.3.99.-]
Pimeloyl-CoA dehydrogenase, large subunit n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UFF1_METS4
Pimeloyl-CoA dehydrogenase, large subunit {ECO:0000313|EMBL:ACA14805.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_cont_500_bf_scaffold_811_curated_23
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19192..19599)
DNA (408bp) protein (136aa)
Acetyl-CoA C-acyltransferase (EC:2.3.1.16); K00632 acetyl-CoA acyltransferase [EC:2.3.1.16]
Acetyl-CoA C-acyltransferase {ECO:0000313|EMBL:ABE61254.1}; EC=2.3.1.16 {ECO:0000313|EMBL:ABE61254.1};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Acetyl-CoA C-acyltransferase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QR93_NITHX
SCNpilot_cont_500_bf_scaffold_811_curated_24
bacterium YEK0313, Bacteria

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comp(20389..22074)
DNA (1686bp) protein (562aa)
fadD; long-chain fatty-acid--CoA ligase (EC:6.2.1.3)
Dicarboxylate-CoA ligase PimA n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P397_9BRAD
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:CEJ12833.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_cont_500_bf_scaffold_811_curated_25
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22071..24164)
DNA (2094bp) protein (698aa)
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein; K07516 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00031AD367
3-hydroxyacyl-CoA dehydrogenase NAD-binding protein {ECO:0000313|EMBL:EHK56342.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
SCNpilot_cont_500_bf_scaffold_811_curated_26
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24214..25005)
DNA (792bp) protein (264aa)
3-oxoadipate enol-lactonase; K01055 3-oxoadipate enol-lactonase [EC:3.1.1.24]
3-oxoadipate enol-lactonase n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MK55_9RHIZ
3-oxoadipate enol-lactonase {ECO:0000313|EMBL:EKF17602.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
SCNpilot_cont_500_bf_scaffold_811_curated_27
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25060..25998
DNA (939bp) protein (313aa)
Short-chain dehydrogenase/reductase SDR n=2 Tax=Acidiphilium RepID=A5G0D2_ACICJ
hypothetical protein
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABQ31314.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
SCNpilot_cont_500_bf_scaffold_811_curated_28
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(26222..27391)
DNA (1170bp) protein (390aa)
Cystathionine gamma-synthase, PLP-dependent {ECO:0000313|EMBL:CDX13705.1}; EC=2.5.1.48 {ECO:0000313|EMBL:CDX13705.1};; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
cystathionine beta-lyase n=1 Tax=Hoeflea sp. 108 RepID=UPI00037C8529
cystathionine beta-lyase/cystathionine gamma-synthase
SCNpilot_cont_500_bf_scaffold_811_curated_29
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(27388..28776)
DNA (1389bp) protein (463aa)
Pyridoxal-5'-phosphate-dependent protein beta subunit; K01697 cystathionine beta-synthase [EC:4.2.1.22]
UPI0003CDDAAF related cluster n=1 Tax=unknown RepID=UPI0003CDDAAF
Cystathionine beta-synthase {ECO:0000313|EMBL:ESY62421.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
SCNpilot_cont_500_bf_scaffold_811_curated_30
unknown

Not on your lists

29125..29355
DNA (231bp) protein (77aa)

This feature has no annotations

Displaying items 1-30 of 70 in total

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