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SCNpilot_cont_500_bf_scaffold_347_curated

Search features with annotation key words

Displaying items 1-30 of 82 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_347_curated_1
Magnetospirillum gryphiswaldense, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(213..1157)
DNA (945bp) protein (315aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881, ECO:0000313|EMBL:CDK99952.1};; TaxID=1430440 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum gryphiswaldense MSR-1 v2.;"
thioredoxin reductase (EC:1.8.1.9); K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
Thioredoxin reductase, FAD/NAD(P)-binding n=2 Tax=Magnetospirillum gryphiswaldense RepID=V6F3I2_9PROT
SCNpilot_cont_500_bf_scaffold_347_curated_2
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(1245..2684)
DNA (1440bp) protein (480aa)
Amidohydrolase family n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q095I4_STIAD
Uncharacterized protein {ECO:0000313|EMBL:KIJ77837.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
amidohydrolase family
SCNpilot_cont_500_bf_scaffold_347_curated_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2711..3325)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y509_RAMTT
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_cont_500_bf_scaffold_347_curated_4
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3328..3723)
DNA (396bp) protein (132aa)
DoxX family protein n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SVS1_9BACT
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_cont_500_bf_scaffold_347_curated_5
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3736..5079)
DNA (1344bp) protein (448aa)
3-hydroxyphenylpropionic acid n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TT65_TISMK
pcaK; 3-hydroxyphenylpropionic acid
3-hydroxyphenylpropionic acid {ECO:0000313|EMBL:AFK55953.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_cont_500_bf_scaffold_347_curated_6
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5269..6801)
DNA (1533bp) protein (511aa)
4-hydroxyphenylacetate 3-monooxygenase {ECO:0000313|EMBL:CDY79056.1}; EC=1.14.14.9 {ECO:0000313|EMBL:CDY79056.1};; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;"
4-hydroxyphenylacetate 3-hydroxylase n=2 Tax=Burkholderia RepID=I5D0G6_9BURK
tcpA; 2,4,6-trichlorophenol monooxygenase
SCNpilot_cont_500_bf_scaffold_347_curated_7
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6844..7413)
DNA (570bp) protein (190aa)
rutF; NAD(P)H-flavin reductase RutF (EC:1.5.1.29); K09024 flavin reductase [EC:1.5.1.-]
Flavin reductase-like, FMN-binding protein n=2 Tax=Burkholderia RepID=I5D0G7_9BURK
NAD(FAD)-dependent dehydrogenase {ECO:0000313|EMBL:KDR42729.1}; Predicted flavin reductase RutF in novel pyrimidine catabolism pathway {ECO:0000313|EMBL:CDY79057.1}; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glathei.;"
SCNpilot_cont_500_bf_scaffold_347_curated_8
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7518..8474
DNA (957bp) protein (319aa)
Uncharacterized protein n=2 Tax=Ralstonia pickettii RepID=U3QP93_RALPI
LysR family transcriptional regulator {ECO:0000313|EMBL:BAL41657.1}; TaxID=329 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii (Burkholderia pickettii).;"
regulatory protein LysR
SCNpilot_cont_500_bf_scaffold_347_curated_9
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8703..9356
DNA (654bp) protein (218aa)
Carboxymuconolactone decarboxylase n=1 Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LTA4_ACIC1
carboxymuconolactone decarboxylase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SCNpilot_cont_500_bf_scaffold_347_curated_trna_3
unknown

Not on your lists

comp(9500..9570)
DNA (71bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_347_curated_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9963..10808
DNA (846bp) protein (282aa)
rrm1; RNA methyltransferase TrmH group 3; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185] rbh
RNA methyltransferase, TrmH family, group 3 n=2 Tax=Rhodopseudomonas palustris RepID=B3QDZ7_RHOPT
Putative rRNA methylase {ECO:0000313|EMBL:CAE28805.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
SCNpilot_cont_500_bf_scaffold_347_curated_11
unknown

Not on your lists

comp(10812..10964)
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_347_curated_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11810..12811)
DNA (1002bp) protein (334aa)
Twin-arginine translocation pathway signal n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IVT2_RHOP2
twin-arginine translocation pathway signal
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:ABD07678.1}; Flags: Precursor;; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_500_bf_scaffold_347_curated_13
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12917..13867
DNA (951bp) protein (317aa)
Transcriptional regulatory protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6L8S5_9RHOB
Transcriptional regulatory protein {ECO:0000313|EMBL:EJW09888.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
LysR family regulatory protein
SCNpilot_cont_500_bf_scaffold_347_curated_14
unknown

Not on your lists

comp(13864..14469)
DNA (606bp) protein (202aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_347_curated_15
unknown

Not on your lists

comp(14522..14923)
DNA (402bp) protein (134aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_347_curated_16
unknown

Not on your lists

15130..15417
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_347_curated_trna_1
unknown

Not on your lists

15486..15557
DNA (72bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_347_curated_17
unknown

Not on your lists

comp(15599..16207)
DNA (609bp) protein (203aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_347_curated_18
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16512..16715
DNA (204bp) protein (68aa)
cold-shock protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002F1F902
Cold-shock protein {ECO:0000313|EMBL:ETR75047.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
cold-shock protein, DNA-binding; K03704 cold shock protein (beta-ribbon, CspA family)
SCNpilot_cont_500_bf_scaffold_347_curated_19
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16977..17459)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJK2_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS27730.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
lipoprotein
SCNpilot_cont_500_bf_scaffold_347_curated_20
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17597..18127)
DNA (531bp) protein (177aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q131U4_RHOPS
Bradyrhizobium elkanii strain UASWS1015 Contig185, whole genome shotgun sequence {ECO:0000313|EMBL:KIU44938.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_347_curated_21
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18254..20341)
DNA (2088bp) protein (696aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PCM6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36098.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
outer membrane hemin/siderophore receptor protein; K02014 iron complex outermembrane recepter protein rbh
SCNpilot_cont_500_bf_scaffold_347_curated_22
unknown

Not on your lists

comp(20876..21166)
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_347_curated_23
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21357..21701)
DNA (345bp) protein (115aa)
Periplasmic divalent cation tolerance protein cutA n=1 Tax=Rhodovulum sp. PH10 RepID=J6JG13_9RHOB
Periplasmic divalent cation tolerance protein cutA {ECO:0000313|EMBL:EJW13615.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
CutA1 divalent ion tolerance protein; K03926 periplasmic divalent cation tolerance protein
SCNpilot_cont_500_bf_scaffold_347_curated_24
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21717..22490
DNA (774bp) protein (258aa)
ppnK; inorganic polyphosphate/ATP-NAD kinase (EC:2.7.1.23); K00858 NAD+ kinase [EC:2.7.1.23]
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SSZ5_NITWN
SCNpilot_cont_500_bf_scaffold_347_curated_25
bacterium YEK0313, Bacteria

Not on your lists

22605..23165
DNA (561bp) protein (187aa)
Chemotaxis protein CheYIII n=1 Tax=Rhodovulum sp. PH10 RepID=J6LLU1_9RHOB
Chemotaxis protein CheY {ECO:0000313|EMBL:CEJ12686.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
two-component response regulator
SCNpilot_cont_500_bf_scaffold_347_curated_26
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23190..23765
DNA (576bp) protein (192aa)
Hpt domain-containing protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QQ60_9BRAD
Hpt domain-containing protein {ECO:0000313|EMBL:EGP06837.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
Hpt protein
SCNpilot_cont_500_bf_scaffold_347_curated_27
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23817..25016)
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QMS0_NITHX
Bradyrhizobium elkanii strain UASWS1015 Contig187, whole genome shotgun sequence {ECO:0000313|EMBL:KIU43392.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_347_curated_28
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25126..26130)
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QE22_RHOPT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACF02367.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
Displaying items 1-30 of 82 in total

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