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scnpilot_cont_500_p_scaffold_6361

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_cont_500_p_scaffold_6361_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..136
DNA (135bp) protein (45aa)
tuf; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu n=3 Tax=Bradyrhizobium RepID=EFTU_BRASB
Elongation factor Tu {ECO:0000255|HAMAP-Rule:MF_00118}; Short=EF-Tu {ECO:0000255|HAMAP-Rule:MF_00118};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiac
scnpilot_cont_500_p_scaffold_6361_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


196..504
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=RS10_RHOPB
rpsJ; 30S ribosomal protein S10
30S ribosomal protein S10 {ECO:0000255|HAMAP-Rule:MF_00508}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseud
scnpilot_cont_500_p_scaffold_6361_3
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


523..1275
DNA (753bp) protein (251aa)
50S ribosomal protein L3 n=3 Tax=Rhodopseudomonas palustris RepID=RL3_RHOPA
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.
rplC; 50S ribosomal protein L3
scnpilot_cont_500_p_scaffold_6361_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1275..1895
DNA (621bp) protein (207aa)
50S ribosomal protein L4 n=2 Tax=Rhodopseudomonas palustris RepID=RL4_RHOPA
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomo
rplD; 50S ribosomal protein L4
scnpilot_cont_500_p_scaffold_6361_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1892..2191
DNA (300bp) protein (100aa)
50S ribosomal protein L23 n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07KM0_RHOP5
rplW; 50S ribosomal protein L23
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodops
scnpilot_cont_500_p_scaffold_6361_6
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2201..3031
DNA (831bp) protein (277aa)
50S ribosomal protein L2 n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A956_STAND
50S ribosomal protein L2
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (s
scnpilot_cont_500_p_scaffold_6361_7
bacterium YEK0313, Bacteria

Not on your lists


3042..3320
DNA (279bp) protein (93aa)
30S ribosomal protein S19 n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0G7H1_9RHIZ
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
30S ribosomal protein S19
scnpilot_cont_500_p_scaffold_6361_8
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3351..3737
DNA (387bp) protein (129aa)
50S ribosomal protein L22 n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003702482
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia
50S ribosomal protein L22
scnpilot_cont_500_p_scaffold_6361_9
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3749..4453
DNA (705bp) protein (235aa)
30S ribosomal protein S3 n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PCN5_9BRAD
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
rpsC; 30S ribosomal protein S3
scnpilot_cont_500_p_scaffold_6361_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4483..4896
DNA (414bp) protein (138aa)
50S ribosomal protein L16 n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003456CE9
rplP; 50S ribosomal protein L16
50S ribosomal protein L16 {ECO:0000255|HAMAP-Rule:MF_01342}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseud
scnpilot_cont_500_p_scaffold_6361_11
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4902..5159
DNA (258bp) protein (86aa)
50S ribosomal protein L29 n=1 Tax=Methylosinus sp. LW4 RepID=UPI00037E326D
50S ribosomal protein L29
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis
scnpilot_cont_500_p_scaffold_6361_12
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5169..5420
DNA (252bp) protein (84aa)
30S ribosomal protein S17 n=1 Tax=Rhodovulum sp. PH10 RepID=J6UF18_9RHOB
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rho
rpsQ; 30S ribosomal protein S17
scnpilot_cont_500_p_scaffold_6361_13
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5455..5823
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Rhodovulum sp. PH10 RepID=J6J941_9RHOB
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rho
rplN; 50S ribosomal protein L14
scnpilot_cont_500_p_scaffold_6361_14
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5823..6149
DNA (327bp) protein (109aa)
50S ribosomal protein L24 n=1 Tax=Rhodovulum sp. PH10 RepID=J6UG23_9RHOB
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum s
rplX; 50S ribosomal protein L24
scnpilot_cont_500_p_scaffold_6361_15
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6142..6732
DNA (591bp) protein (197aa)
50S ribosomal protein L5 n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TKA3_9BRAD
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000256|RuleBase:RU003931}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhi
rplE; 50S ribosomal protein L5
scnpilot_cont_500_p_scaffold_6361_16
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6775..7080
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAD1_9BRAD
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;
rpsN; 30S ribosomal protein S14
scnpilot_cont_500_p_scaffold_6361_17
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7091..7489
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2WJF5_9BRAD
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobi
rpsH; 30S ribosomal protein S8
scnpilot_cont_500_p_scaffold_6361_18
Streptomyces sp. AcH 505, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


7489..8022
DNA (534bp) protein (178aa)
50S ribosomal protein L6 n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z9P4_9BRAD
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=352211 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="
50S ribosomal protein L6
scnpilot_cont_500_p_scaffold_6361_19
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8035..8391
DNA (357bp) protein (119aa)
50S ribosomal protein L18 n=1 Tax=Rhodovulum sp. PH10 RepID=J6UG19_9RHOB
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum s
rplR; 50S ribosomal protein L18
scnpilot_cont_500_p_scaffold_6361_20
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8409..8975
DNA (567bp) protein (189aa)
30S ribosomal protein S5 n=7 Tax=Bradyrhizobium RepID=RS5_BRASB
rpsE; 30S ribosomal protein S5
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhi
scnpilot_cont_500_p_scaffold_6361_21
Chelatococcus sp. BSN60, Chelatococcus, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9023..9217
DNA (195bp) protein (65aa)
50S ribosomal protein L30 n=1 Tax=Chelatococcus sp. BSN60 RepID=L0MXX1_9RHIZ
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1095349 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Chelato
50S ribosomal subunit protein L30
scnpilot_cont_500_p_scaffold_6361_22
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9351..9926
DNA (576bp) protein (192aa)
50S ribosomal protein L15 n=1 Tax=Afipia birgiae RepID=UPI0002EE55E7
rplO; 50S ribosomal protein L15
50S ribosomal protein L15 {ECO:0000255|HAMAP-Rule:MF_01341}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter ham
scnpilot_cont_500_p_scaffold_6361_23
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9967..10590
DNA (624bp) protein (208aa)
Protein translocase subunit SecY n=2 Tax=Bradyrhizobiaceae RepID=F7QPX6_9BRAD
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bac
preprotein translocase SECY subunit
Displaying 23 items

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