ggKbase home page

scnpilot_cont_500_p_scaffold_654

Search features with annotation key words

Displaying items 1-30 of 60 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_cont_500_p_scaffold_654_1
unknown

Not on your lists

comp(2..88)
DNA (87bp) protein (29aa)

This feature has no annotations

scnpilot_cont_500_p_scaffold_654_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(105..2780)
DNA (2676bp) protein (892aa)
Assimilatory nitrate reductase (NADH) alpha subunit apoprotein {ECO:0000313|EMBL:ABD06460.1}; EC=1.7.1.1 {ECO:0000313|EMBL:ABD06460.1};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobact
nitrate reductase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003452C0C rbh
molybdopterin oxidoreductase
scnpilot_cont_500_p_scaffold_654_3
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2780..4417)
DNA (1638bp) protein (546aa)
Sulfite reductase {ECO:0000313|EMBL:ETR75162.1}; EC=1.8.1.2 {ECO:0000313|EMBL:ETR75162.1};; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia
sulfite reductase (EC:1.8.1.2)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PCT4_9BRAD
scnpilot_cont_500_p_scaffold_654_4
Streptomyces sp. AcH 505, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4414..6171)
DNA (1758bp) protein (586aa)
nirA; ferredoxin-nitrite reductase (EC:1.7.7.1) rbh
Ferredoxin--nitrite reductase {ECO:0000313|EMBL:KIF65920.1}; EC=1.7.7.1 {ECO:0000313|EMBL:KIF65920.1};; TaxID=352211 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyce
Precorrin-3B synthase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07S72_RHOP5 rbh
scnpilot_cont_500_p_scaffold_654_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6176..7384)
DNA (1209bp) protein (403aa)
Assimilatory nitrate reductase (NADH) beta subunit {ECO:0000313|EMBL:ABJ05213.1}; EC=1.7.1.1 {ECO:0000313|EMBL:ABJ05213.1};; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizob
Assimilatory nitrate reductase (NADH) beta subunit n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07S71_RHOP5 rbh
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
scnpilot_cont_500_p_scaffold_654_6
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7390..8184)
DNA (795bp) protein (265aa)
nitrate ABC transporter ATP-binding protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000373DD9C rbh
nrtC; nitrate transport protein
Nitrate transport protein {ECO:0000313|EMBL:ABQ34949.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium s
scnpilot_cont_500_p_scaffold_654_7
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8195..8365)
DNA (171bp) protein (57aa)
bicarbonate ABC transporter permease n=1 Tax=Bradyrhizobium elkanii RepID=UPI000367A607
Nitrate ABC transporter, permease protein {ECO:0000313|EMBL:EJN06429.1}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyr
nitrate transport permease
scnpilot_cont_500_p_scaffold_654_8
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8359..8940)
DNA (582bp) protein (194aa)
Nitrate ABC transporter, permease protein n=2 Tax=Bradyrhizobiaceae RepID=F7QMW1_9BRAD
Nitrate ABC transporter, permease protein {ECO:0000313|EMBL:EGP07464.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiacea
nitrate ABC transporter inner membrane subunit
scnpilot_cont_500_p_scaffold_654_9
Streptomyces sp. AcH 505, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9014..10336)
DNA (1323bp) protein (441aa)
ABC-type nitrate transport system periplasmic component n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07S67_RHOP5 rbh
ABC-type nitrate transport system periplasmic component
Bicarbonate-binding protein {ECO:0000313|EMBL:KIF65914.1}; TaxID=352211 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AcH 505.;"
scnpilot_cont_500_p_scaffold_654_10
Streptomyces sp. AcH 505, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10668..11834)
DNA (1167bp) protein (389aa)
Nitrate ABC transporter, nitrate-binding protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QMV9_9BRAD rbh
Nitrate transporter {ECO:0000313|EMBL:KIF65915.1}; TaxID=352211 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. AcH 505.;"
nitrate transport protein
scnpilot_cont_500_p_scaffold_654_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11831..12463)
DNA (633bp) protein (211aa)
Response regulator receiver and ANTAR domain protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07S65_RHOP5 rbh
response regulator receiver/ANTAR domain-containing protein rbh
Response regulator receiver and ANTAR domain protein {ECO:0000313|EMBL:ABJ05219.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomona
scnpilot_cont_500_p_scaffold_654_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12778..13614)
DNA (837bp) protein (279aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1076 species="Ba
nth; DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (EC:3.2.2.- 4.2.99.18)
Endonuclease III n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5E8K4_BRASB
scnpilot_cont_500_p_scaffold_654_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13616..14116
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P518_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34735.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
scnpilot_cont_500_p_scaffold_654_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14194..15087
DNA (894bp) protein (298aa)
Methylated-DNA-[protein]-cysteine S-methyltransferase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P223_9BRAD
Methylated-DNA-[protein]-cysteine S-methyltransferase {ECO:0000313|EMBL:EKS34734.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" sour
transcriptional regulatory protein AraC family
scnpilot_cont_500_p_scaffold_654_15
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15084..16475)
DNA (1392bp) protein (464aa)
formyl-coenzyme a transferase, caib/baif family (EC:2.8.3.16)
CoA-transferase family III, caib/baif family protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JYI9_9PROT rbh
CoA-transferase family III, caib/baif family protein {ECO:0000313|EMBL:EKE70305.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibac
scnpilot_cont_500_p_scaffold_654_16
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16472..17095)
DNA (624bp) protein (208aa)
phosphoglyceromutase (EC:5.4.2.1)
phosphoglyceromutase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034A8B00
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01039, ECO:0000256|RuleBase:RU004512}; Short=BPG-dependent PGAM {ECO:0000256|HAMAP-Rule:MF_01039};; Short=PGAM {ECO
scnpilot_cont_500_p_scaffold_654_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17098..17925)
DNA (828bp) protein (276aa)
dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000255|HAMAP-Rule:MF_00102}; Short=HTPA reductase {ECO:0000255|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000255|HAMAP-Rule:MF_00102};; TaxID=316058 spec
dihydrodipicolinate reductase n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003449027
scnpilot_cont_500_p_scaffold_654_18
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17986..18285)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UL69_METS4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACA17069.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacteri
scnpilot_cont_500_p_scaffold_654_19
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18312..19004)
DNA (693bp) protein (231aa)
orotidine 5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase {ECO:0000255|HAMAP-Rule:MF_01200}; EC=4.1.1.23 {ECO:0000255|HAMAP-Rule:MF_01200};; OMP decarboxylase {ECO:0000255|HAMAP-Rule:MF_01200}; Short=OMPDCase {ECO:0000255
Orotidine 5'-phosphate decarboxylase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=PYRF_RHOP5
scnpilot_cont_500_p_scaffold_654_20
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19018..19599)
DNA (582bp) protein (194aa)
Putative flavoprotein n=1 Tax=Rhodovulum sp. PH10 RepID=J6LBC8_9RHOB
Putative flavoprotein {ECO:0000313|EMBL:EJW10643.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.
NADPH-dependent FMN reductase
scnpilot_cont_500_p_scaffold_654_21
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19705..20457)
DNA (753bp) protein (251aa)
Phospholipid N-methyltransferase n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5E8J6_BRASB
pmtA; phospholipid N-methyltransferase
Methyltransferase {ECO:0000313|EMBL:KJC61869.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP
scnpilot_cont_500_p_scaffold_654_22
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20426..21580)
DNA (1155bp) protein (385aa)
Chaperone protein DnaJ n=1 Tax=Rhodovulum sp. PH10 RepID=J6J0N3_9RHOB
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodov
chaperone protein DnaJ
scnpilot_cont_500_p_scaffold_654_23
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21725..23638)
DNA (1914bp) protein (638aa)
Chaperone protein DnaK n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=DNAK_NITHX
Chaperone protein DnaK {ECO:0000255|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000255|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000255|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000255|HAMAP
dnaK; molecular chaperone DnaK
scnpilot_cont_500_p_scaffold_654_24
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23900..24865
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6LJU8_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW13043.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH1
hypothetical protein
scnpilot_cont_500_p_scaffold_654_25
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24896..25522)
DNA (627bp) protein (209aa)
Protein GrpE n=1 Tax=Methylobacterium extorquens (strain DSM 5838 / DM4) RepID=C7C6X8_METED
heat shock protein (HSP-70 COFACTOR), grpE
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=440085 species="Bacteria; Proteobacteria; Alphaproteobacteria; R
scnpilot_cont_500_p_scaffold_654_26
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25588..26679)
DNA (1092bp) protein (364aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07US3_RHOP5
hrcA; heat-inducible transcription repressor
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhi
scnpilot_cont_500_p_scaffold_654_27
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26858..27571
DNA (714bp) protein (238aa)
rph; ribonuclease PH (EC:2.7.7.56)
Ribonuclease PH {ECO:0000255|HAMAP-Rule:MF_00564}; Short=RNase PH {ECO:0000255|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000255|HAMAP-Rule:MF_00564};; tRNA nucleotidyltransferase {ECO:0000255|HAMAP-Rul
Ribonuclease PH n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=RNPH_NITHX
scnpilot_cont_500_p_scaffold_654_28
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


27568..28221
DNA (654bp) protein (218aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard p
Non-canonical purine NTP pyrophosphatase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZYZ0_STAND rbh
Ham1 family protein rbh
scnpilot_cont_500_p_scaffold_654_29
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28362..29537
DNA (1176bp) protein (392aa)
Possible oxygen-independent coproporphyrinogen III oxidase (HemN) n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6NCZ0_RHOPA
hemN2; coproporphyrinogen III oxidase
Possible oxygen-independent coproporphyrinogen III oxidase (HemN) {ECO:0000313|EMBL:CAE25771.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rh
scnpilot_cont_500_p_scaffold_654_30
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29554..30723)
DNA (1170bp) protein (390aa)
Extracellular ligand-binding receptor protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6UGX2_9RHOB rbh
Extracellular ligand-binding receptor protein {ECO:0000313|EMBL:EJW12674.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" sour
hypothetical protein
Displaying items 1-30 of 60 in total

View Taxonomy