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scnpilot_cont_500_p_scaffold_4220

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_cont_500_p_scaffold_4220_1
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..826
DNA (825bp) protein (275aa)
ATP-dependent DNA ligase {ECO:0000313|EMBL:EHK78798.1}; EC=6.5.1.1 {ECO:0000313|EMBL:EHK78798.1};; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sino
DNA ligase D (EC:6.5.1.1)
ATP-dependent DNA ligase n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FVT6_RHIML
scnpilot_cont_500_p_scaffold_4220_2
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

860..1240
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X4Y1_RHIFR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL50937.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" so
scnpilot_cont_500_p_scaffold_4220_3
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1241..2299)
DNA (1059bp) protein (353aa)
ATP-dependent DNA ligase n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=A9CLR5_AGRT5 rbh
ATP-dependent DNA ligase {ECO:0000313|EMBL:KDP72615.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="
ATP-dependent DNA ligase
scnpilot_cont_500_p_scaffold_4220_4
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2352..3164)
DNA (813bp) protein (271aa)
DNA repair protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003806F62 rbh
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; En
Ku protein rbh
scnpilot_cont_500_p_scaffold_4220_5
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3176..4078)
DNA (903bp) protein (301aa)
DNA helicase n=1 Tax=Rhizobium leguminosarum RepID=UPI0003677BF4 rbh
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; En
ATP-dependent DNA helicase Ku-type protein rbh
scnpilot_cont_500_p_scaffold_4220_6
Rhizobium lupini, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4283..4465
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Rhizobium lupini HPC(L) RepID=K5D6K1_RHILU
Uncharacterized protein {ECO:0000313|EMBL:EKJ97175.1}; TaxID=1229491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" sour
hypothetical protein
scnpilot_cont_500_p_scaffold_4220_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4495..5376
DNA (882bp) protein (294aa)
hypothetical protein n=1 Tax=Rhizobium radiobacter RepID=UPI00036D4705 rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR81017.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
scnpilot_cont_500_p_scaffold_4220_8
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5373..6161)
DNA (789bp) protein (263aa)
exoA; exodeoxyribonuclease (EC:3.1.11.2)
Exodeoxyribonuclease {ECO:0000313|EMBL:CDM62604.1}; EC=3.1.11.2 {ECO:0000313|EMBL:CDM62604.1};; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobiu
Exodeoxyribonuclease III n=1 Tax=Rhizobium sp. CF122 RepID=J3BR65_9RHIZ rbh
scnpilot_cont_500_p_scaffold_4220_9
unknown

Not on your lists

6206..6805
DNA (600bp) protein (200aa)

This feature has no annotations

scnpilot_cont_500_p_scaffold_4220_10
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6885..7475)
DNA (591bp) protein (197aa)
hypothetical protein n=1 Tax=Rhizobium phaseoli RepID=UPI0002E24B2C rbh
Uncharacterized protein {ECO:0000313|EMBL:KEC78446.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" so
hypothetical protein
scnpilot_cont_500_p_scaffold_4220_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7575..8357)
DNA (783bp) protein (261aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1410620 species="Bacteria; Proteobacteria; Al
DNA polymerase IV (EC:2.7.7.7)
DNA polymerase IV n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CFM9_9RHIZ
scnpilot_cont_500_p_scaffold_4220_12
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8388..8663)
DNA (276bp) protein (92aa)
DNA polymerase IV (EC:2.7.7.7)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113, ECO:0000256|SAAS:SAAS00019792};; TaxID=1208324 specie
DNA polymerase IV n=1 Tax=Rhizobium freirei PRF 81 RepID=N6USM9_9RHIZ
scnpilot_cont_500_p_scaffold_4220_13
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8665..8844)
DNA (180bp) protein (60aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobiu
ATP-dependent DNA helicase (EC:3.6.1.-)
ATP-dependent DNA helicase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C044_9RHIZ
Displaying 13 items

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