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scnpilot_cont_500_p_scaffold_18

Search features with annotation key words

Displaying items 61-90 of 293 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_cont_500_p_scaffold_18_61
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


49946..50362
DNA (417bp) protein (139aa)
50S ribosomal protein L17 n=3 Tax=Sphingobium RepID=D4YYI0_SPHJU
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; N
rplQ; ribosomal protein L17
scnpilot_cont_500_p_scaffold_18_62
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(50450..51880)
DNA (1431bp) protein (477aa)
AMP nucleosidase {ECO:0000256|HAMAP-Rule:MF_01932}; EC=3.2.2.4 {ECO:0000256|HAMAP-Rule:MF_01932};; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
AMP nucleosidase (EC:3.2.2.4)
AMP nucleosidase n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J2Q5_9SPHN rbh
scnpilot_cont_500_p_scaffold_18_63
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52028..53032
DNA (1005bp) protein (335aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 83 RepID=UPI0003674C7B rbh
Amidohydrolase {ECO:0000313|EMBL:KHS45799.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subter
hypothetical protein
scnpilot_cont_500_p_scaffold_18_64
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(53103..53696)
DNA (594bp) protein (198aa)
50S ribosomal protein L9 n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=RL9_NOVAD rbh
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphi
rplI; 50S ribosomal protein L9
scnpilot_cont_500_p_scaffold_18_65
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(53709..53933)
DNA (225bp) protein (75aa)
30S ribosomal protein S18 n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C947_9SPHN
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosp
rpsR; 30S ribosomal protein S18
scnpilot_cont_500_p_scaffold_18_66
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(53937..54299)
DNA (363bp) protein (121aa)
30S ribosomal protein S6 n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1ZDC1_9SPHN
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosph
rpsF; 30S ribosomal protein S6
scnpilot_cont_500_p_scaffold_18_67
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54594..56441
DNA (1848bp) protein (616aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z597_9SPHN rbh
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:EGD60275.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.
methyl-accepting chemotaxis protein McpL
scnpilot_cont_500_p_scaffold_18_68
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56512..56985
DNA (474bp) protein (158aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadale
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=A4XEA6_NOVAD
ybaK/ebsC protein
scnpilot_cont_500_p_scaffold_18_69
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56982..58214)
DNA (1233bp) protein (411aa)
Dihydroorotase {ECO:0000313|EMBL:KHS44294.1}; EC=3.5.2.3 {ECO:0000313|EMBL:KHS44294.1};; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosp
dihydroorotase (EC:3.5.2.3)
dihydroorotase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B5672F rbh
scnpilot_cont_500_p_scaffold_18_70
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(58211..59203)
DNA (993bp) protein (331aa)
aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001, ECO:0000313|EMBL:CCA92741.1};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_0000
Aspartate carbamoyltransferase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IMT9_9SPHN rbh
scnpilot_cont_500_p_scaffold_18_71
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

59317..61224
DNA (1908bp) protein (636aa)
Protease 4 {ECO:0000256|PIRNR:PIRNR001217}; EC=3.4.21.- {ECO:0000256|PIRNR:PIRNR001217};; Endopeptidase IV {ECO:0000256|PIRNR:PIRNR001217}; Protease IV {ECO:0000256|PIRNR:PIRNR001217}; Signal peptide
protease IV (EC:3.4.21.-)
Protease IV n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U3A3P8_9SPHN rbh
scnpilot_cont_500_p_scaffold_18_72
unknown

Not on your lists

comp(61228..61641)
DNA (414bp) protein (138aa)

This feature has no annotations

scnpilot_cont_500_p_scaffold_18_73
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62015..63529
DNA (1515bp) protein (505aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-R
Trigger factor n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=TIG_NOVAD rbh
tig; trigger factor
scnpilot_cont_500_p_scaffold_18_74
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(63597..65069)
DNA (1473bp) protein (491aa)
Putative dioxygenase n=1 Tax=Sphingobium sp. SYK-6 RepID=G2IQG5_9SPHN rbh
putative dioxygenase
Putative dioxygenase {ECO:0000313|EMBL:BAK68339.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK
scnpilot_cont_500_p_scaffold_18_75
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65318..65983
DNA (666bp) protein (222aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopep
clpP; ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Sphingomonas sp. LH128 RepID=J8W220_9SPHN rbh
scnpilot_cont_500_p_scaffold_18_76
Novosphingobium aromaticivorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

66111..67367
DNA (1257bp) protein (419aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=CLPX_NOVAD rbh
clpX; ATP-dependent protease ATP-binding subunit ClpX
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000255|HAMAP-Rule:MF_00175}; TaxID=279238 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosph
scnpilot_cont_500_p_scaffold_18_77
RIFOXYB1_FULL_Caulobacterales_67_16_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67438..67929)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Sphingobium sp. AP49 RepID=J2WUC8_9SPHN
glutathione-dependent formaldehyde-activating protein Tax=RIFOXYB1_FULL_Caulobacterales_67_16_curated
aldehyde-activating protein
scnpilot_cont_500_p_scaffold_18_78
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67943..68821)
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZQI8_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:GAD47644.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
rarD protein
scnpilot_cont_500_p_scaffold_18_79
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(68914..70365)
DNA (1452bp) protein (484aa)
astD; succinylglutamic semialdehyde dehydrogenase (EC:1.2.1.-)
Succinylglutamic semialdehyde dehydrogenase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z6X1_9SPHN
Succinylglutamic semialdehyde dehydrogenase {ECO:0000313|EMBL:EGD59781.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;"
scnpilot_cont_500_p_scaffold_18_80
Kirrobacter mercurialis, Kirrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(70483..71922)
DNA (1440bp) protein (480aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C4Y4_9SPHN rbh
Selenoprotein O {ECO:0000313|EMBL:KHL26410.1}; TaxID=1572751 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Kirrobacter.;" source="Kirrobacter mercuriali
hypothetical protein
scnpilot_cont_500_p_scaffold_18_81
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

72003..72869
DNA (867bp) protein (289aa)
Putative hydrolase n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHL0_9SPHN rbh
Putative hydrolase {ECO:0000313|EMBL:GAD47640.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium
alpha/beta hydrolase
scnpilot_cont_500_p_scaffold_18_82
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

72866..74008
DNA (1143bp) protein (381aa)
Group 1 glycosyl transferase n=1 Tax=Sphingomonas sp. LH128 RepID=J8VLV6_9SPHN rbh
Glycosyl transferase family 1 {ECO:0000313|EMBL:KHK89682.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novos
group 1 glycosyl transferase
scnpilot_cont_500_p_scaffold_18_83
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

74151..75092
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G9T5_NOVAD
Mlr7403 protein {ECO:0000313|EMBL:GAO53676.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp.
hypothetical protein
scnpilot_cont_500_p_scaffold_18_84
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

75125..76483
DNA (1359bp) protein (453aa)
Outer membrane protein assembly factor BamB n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHZ8_9SPHN rbh
Outer membrane protein yfgL, lipoprotein component of the protein assembly complex {ECO:0000313|EMBL:GAO53675.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales
pyrrolo-quinoline quinone
scnpilot_cont_500_p_scaffold_18_85
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

76526..77830
DNA (1305bp) protein (435aa)
protein-S-isoprenylcysteine methyltransferase n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B6297B rbh
isoprenylcysteine carboxyl methyltransferase
Isoprenylcysteine carboxyl methyltransferase {ECO:0000313|EMBL:CCA91468.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;"
scnpilot_cont_500_p_scaffold_18_86
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(77827..79197)
DNA (1371bp) protein (457aa)
Glutamate--cysteine ligase {ECO:0000313|EMBL:GAO53672.1}; EC=6.3.2.2 {ECO:0000313|EMBL:GAO53672.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomona
Glutamate--cysteine ligase n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6ECU2_9SPHN rbh
glutamate--cysteine ligase
scnpilot_cont_500_p_scaffold_18_87
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(79278..80039)
DNA (762bp) protein (254aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sp
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHZ4_9SPHN rbh
16S ribosomal RNA methyltransferase RsmE
scnpilot_cont_500_p_scaffold_18_88
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

80075..80998
DNA (924bp) protein (308aa)
4-hydroxybenzoate polyprenyltransferase {ECO:0000313|EMBL:GAO53670.1}; EC=2.5.1.39 {ECO:0000313|EMBL:GAO53670.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadale
ubiA; 4-hydroxybenzoate polyprenyltransferase (EC:2.5.1.-)
Prenyltransferase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z6Y1_9SPHN rbh
scnpilot_cont_500_p_scaffold_18_89
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(81008..84424)
DNA (3417bp) protein (1139aa)
Chromosome partition protein Smc n=1 Tax=Novosphingobium sp. PP1Y RepID=F6II33_9SPHN rbh
chromosome segregation protein
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source=
scnpilot_cont_500_p_scaffold_18_90
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(84434..85189)
DNA (756bp) protein (252aa)
Protein-disulfide isomerase n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C4Z0_9SPHN
Protein-disulfide isomerase {ECO:0000313|EMBL:EIZ78867.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphi
protein-disulfide isomerase
Displaying items 61-90 of 293 in total

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