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scnpilot_cont_500_p_scaffold_48_121

Organism: SCNPILOT_CONT_500_P_Novosphingobium_63_111

near complete RP 50 / 55 MC: 1 BSCG 51 / 51 ASCG 11 / 38
Location: comp(135700..139191)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=473781 species="Bacteria; Pr similarity UNIPROT
DB: UniProtKB
  • Identity: 79.7
  • Coverage: 999.99
  • Bit_score: 1834
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Sphingomonas sp. LH128 RepID=J8SBP5_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 79.7
  • Coverage: 999.99
  • Bit_score: 1834
  • Evalue 0.0
  • rbh
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 78.1
  • Coverage: 999.99
  • Bit_score: 1800
  • Evalue 0.0

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Taxonomy

Sphingomonas sp. LH128 → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3492
ATGGCTGATATCTCCCGCATTCTTGGCGCCAAATCGCCCCTGACGCTGGCGGGCCTGTCGCGCGGCAGCCAGCCTCTGGTGCTGGCCGATCTGGCGCGGGCAGCCTCGCACAAGGGGGGCCGCGCGGTGTTCGTGGCCGCCGACGAAGCCGCGATGCGCTCGATTGCCGATGTCGCCCCGGTGTTTGCGCCCGAGCTGGAGGTCATCGAATTTCCCGCGTGGGACTGCCTGCCCTATGACCGCTCCAGCCCGGCGCTGTCGGTCTCCTCGCGCCGCCTTGCCGCGCTGCATCGGTTGCAACAGCCCGCCAAGACTCCGCAACTACTGGTCACGACGATTGCCGCCGTGCTGCAAAGGGTGCTCACGCCCTTCCGCATCCGCGAATCGGTGCGCTTGCTCAAATCCGGGGCCGAGGTGGGGCGCGAAACGCTGACCTCGCTGCTGTCGCGCGCGGGCTATGCGCGGACCGATACGGTGGCGGATGCTGGCGAATATGCGGTGCGCGGCTCGATCTTCGACATTTTCCCCTCGGGGCTGGAACACGGCCTGCGCCTCGATTTCTTTGGCGACGAGATCGAGACCCTGCGCCTGTTCGATCCCAACACCCAGCGCACCGTGGGCACGGTGGAGCAGCACCTGCTGCTGCCCGCCAGCGAGGCGATGCTGGAGGATGCCACCGTCAAGCGCTTCCGCACCCGCTATCGCGAGATGTTCGGGGCGACGGCCACCTCCGATCCGCTCTATCAGGCGATCACCGATGGGCGGCGTCTGGCGGGGATGGAACATTGGCTGCCGCTGCTGGAGGACCGGCTGGTCACGATTTTCGACCATCTGGCGGCCGATGATCTGCTGGTGGTCGATGCCTCGGCGGCTCATTCCGCCGAAGAGCGCCTGACCGACATTGCCGACTATTACGCGGCCCGCAAGGACACATCCGGCAAGGCGCCGGGCGCCTATCGCCCGCTTGAACCCGCCTCGCTCTATCTGACGCAGGATGAGCTGACGCAGCGTCTGGCCGCATGGCCCGCCCACCGGGCGGAACCCTTCCCCCAGCCCGATGGCGCGGCCACGGTCGATTTCGCCTTTGGCAATGCCCGCGATTTCGCCCCCGAACGCGCACGGGGCGACAATGCCTATGAGGCCGCCGCCAAACACCTGCTGACCGCCGCGCGCTCCGGCCGCCGCGCGATCCTTGCCGCCTATTCCACCGGCAGCCGGGCGCGCATCACCTCGATCCTTGCCGAGGCGCAATCTCCCGGCCCGACCATGGCCGACAATTGGCAGGAGGCGCTGGGCATTGCCGGGACCGGGCGCGTGGCGGCCATCGTGCTGCCACTCGACACCGGTTTTGCCAATGCCGACATCGAACTGGTCACCGAGCAGGACCTGCTGGGCGACCGTCTGGTGCGCCGCAAAAAGAAGAAGAAATCGGCCGACGCCTTTTTGGCCGAACTGGCCGCGCTGACGCCGGGCGATCTGGTCGTGCATATGGAGCATGGCATCGGGCGCTATGAGGGCCTGCAGTCGATCCCGGTCGGCGGGTCGGCGCATGACTGTGTAATGCTCACCTATGCAGGGGGCGACAAGCTCTATGTGCCGGTGGAAAATCTCGATGTGCTCTCGCGCTTTGGGTCCGAATCCGAGGGCGTTGCGCTGGATCGGCTGGGCGGCGAGGGATGGCAGAAGCGGCGCGCGAAACTGCGCGAACGCATCCGCGAGATCGCGCATGAATTGTTGAAAACCGCTGCCCTTCGCGCGCTGAAAACCGCGCCCGCGCTGCTGTCCGATCCGGCCAGCTATGATCCCTTCTGCGACCGCTTCCCTTGGCAGGAGACTGAGGATCAGGAAGCGGCGATCTCCGATGTGATCGAGGATCTGGCCTCCGGCCGCCCGATGGACCGCCTCGTCTGCGGCGATGTGGGCTTTGGCAAGACCGAGGTGGCGCTGCGCGCGGCTTTCGTTGCCGCCATGGCGGGGCAACAGGTAGCTGTTGTCGCGCCCACCACTTTGCTCGCGCGCCAGCACCACAAGGGCTTTACCGAGCGCTTTGCCGGTTTCCCGCTCAATGTGGGCCGCCTCTCGCGCCTTGTACCCGACAAGGAGGCCAGCCTGACCCGCGCGGGGCTGGAGGACGGCACGGTGGACATTGTGGTCGGCACCCATGCGCTTTTGGCCAAGAATGTGAAGTTCAAGCGGCTGGGCCTTGTTATCGTTGACGAAGAACAGCGCTTTGGCGTCAACCACAAGGAGCGGTTGAAGCAATTGCGCGCCGACGTTCACATGCTGACGCTGACGGCAACGCCCATCCCGCGCACCTTGCAGATGGCCATGTCGGGCCTGCGCGAGCTTTCCACCATCCAGACGCCGCCGGTCGATCGCCTGGCCGTGCGCACCTATGTGATGGAGTGGGACGAGGTGGTGATGCGCGAGGCTTTGCTGCGCGAACATCATCGCGGCGGGCAGAGCTTTATCGTCGTGCCGCGCATTTCCGATATGGCCGAGATCGAGGACTGGCTGCACGCCGCCGTGCCCGAGGTCAAATATATCGCCGCCCATGGCCAGATGTCGCCCAGCGAGGTCGAGGAGCGCATGAGCGCGTTCTACGAGCGGCGCTATGACGTGCTGGTTTCGACCACGATTGTGGAAAGCGGGATCGACATCCCCTCGGCCAACACGATCATCATCCACCGCGCGGACCGTTTCGGGCTGGCCCAGCTCTATCAGTTGCGCGGGCGCGTAGGGCGCTCGAAACTGCGGGCCTATGCATACCTCACCACGCCTGCGGGCCGGGCGCTGAACGAGACGGCGGAGAAGCGGCTGAAAGTGCTGGGCGATCTCGATTCGCTGGGCGCGGGCTTCCAACTGGCCAGCCACGATCTCGACATTCGCGGCGCGGGCAATCTGCTGGGCGATGAGCAGTCGGGCCATATCCGCGAGGTCGGCTTCGAGCTCTATCAGTCGATGCTGGAGGATGCGATTCTGGCCGCCAAGGCGGGCGAATACGGGCTGGAGCGCGAGAGCACCAAGGGCCTCTCGCCCCAGATCACGGTCGATGCGCCGATCATGATCCCGGAGGATTACGTCCCGGATCTGGCCGTCCGCATGGCGCTCTATCGCCGGTTGAACGATGCCGAGGATACGCGCGAGATCGAGGCGCTCTCGGCCGAAATGATCGACCGGTTTGGCCCCCTGCCCTCGGCCACCGAAAACCTCATCCAGCTTATCCAGATCAAGCGCCAGGCCATCGAGGCCCATATCGCCAAGATCGACGTGGGGCCGCGCGGTACGCTCGTCGCGTTCCACAACGACAATTTCCCCGATCCGGCCGGACTGTTCGCCTATGTCGAGCGCGTCGGCGGGGCGGTGAAGCTGAGGCCCGATTCCAAACTGGTGGTCCAGCGCGCATGGGGCGATCCCAAGGCGCGGTTGAACGGGCTGTTCCAACTGACCAAGGGGTTGAGTGCGGTGGCTCGGAAGGGGAAGAAGAAGTAA
PROTEIN sequence
Length: 1164
MADISRILGAKSPLTLAGLSRGSQPLVLADLARAASHKGGRAVFVAADEAAMRSIADVAPVFAPELEVIEFPAWDCLPYDRSSPALSVSSRRLAALHRLQQPAKTPQLLVTTIAAVLQRVLTPFRIRESVRLLKSGAEVGRETLTSLLSRAGYARTDTVADAGEYAVRGSIFDIFPSGLEHGLRLDFFGDEIETLRLFDPNTQRTVGTVEQHLLLPASEAMLEDATVKRFRTRYREMFGATATSDPLYQAITDGRRLAGMEHWLPLLEDRLVTIFDHLAADDLLVVDASAAHSAEERLTDIADYYAARKDTSGKAPGAYRPLEPASLYLTQDELTQRLAAWPAHRAEPFPQPDGAATVDFAFGNARDFAPERARGDNAYEAAAKHLLTAARSGRRAILAAYSTGSRARITSILAEAQSPGPTMADNWQEALGIAGTGRVAAIVLPLDTGFANADIELVTEQDLLGDRLVRRKKKKKSADAFLAELAALTPGDLVVHMEHGIGRYEGLQSIPVGGSAHDCVMLTYAGGDKLYVPVENLDVLSRFGSESEGVALDRLGGEGWQKRRAKLRERIREIAHELLKTAALRALKTAPALLSDPASYDPFCDRFPWQETEDQEAAISDVIEDLASGRPMDRLVCGDVGFGKTEVALRAAFVAAMAGQQVAVVAPTTLLARQHHKGFTERFAGFPLNVGRLSRLVPDKEASLTRAGLEDGTVDIVVGTHALLAKNVKFKRLGLVIVDEEQRFGVNHKERLKQLRADVHMLTLTATPIPRTLQMAMSGLRELSTIQTPPVDRLAVRTYVMEWDEVVMREALLREHHRGGQSFIVVPRISDMAEIEDWLHAAVPEVKYIAAHGQMSPSEVEERMSAFYERRYDVLVSTTIVESGIDIPSANTIIIHRADRFGLAQLYQLRGRVGRSKLRAYAYLTTPAGRALNETAEKRLKVLGDLDSLGAGFQLASHDLDIRGAGNLLGDEQSGHIREVGFELYQSMLEDAILAAKAGEYGLERESTKGLSPQITVDAPIMIPEDYVPDLAVRMALYRRLNDAEDTREIEALSAEMIDRFGPLPSATENLIQLIQIKRQAIEAHIAKIDVGPRGTLVAFHNDNFPDPAGLFAYVERVGGAVKLRPDSKLVVQRAWGDPKARLNGLFQLTKGLSAVARKGKKK*