ggKbase home page

scnpilot_cont_500_p_scaffold_48

Search features with annotation key words

Displaying items 1-30 of 171 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_cont_500_p_scaffold_48_1
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(85..1164)
DNA (1080bp) protein (360aa)
Sex pilus assembly and synthesis protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z4J0_9SPHN rbh
Sex pilus assembly and synthesis protein {ECO:0000313|EMBL:EGD60460.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" sou
conjugal transfer protein
scnpilot_cont_500_p_scaffold_48_2
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1161..1820)
DNA (660bp) protein (220aa)
Type-F conjugative transfer system protein TraW n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z4I9_9SPHN rbh
Type-F conjugative transfer system protein TraW {ECO:0000313|EMBL:EGD60459.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium
conjugal transfer protein TraW
scnpilot_cont_500_p_scaffold_48_3
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1820..2362)
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI000367C420 rbh
Conjugal transfer protein {ECO:0000313|EMBL:EGD59309.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphing
type IV secretory pathway protease TraF-like protein
scnpilot_cont_500_p_scaffold_48_4
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2346..2900)
DNA (555bp) protein (185aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7R7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59308.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
conjugal transfer protein
scnpilot_cont_500_p_scaffold_48_5
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2893..3228)
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI0002FB4C27
Uncharacterized protein {ECO:0000313|EMBL:EGD59307.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
scnpilot_cont_500_p_scaffold_48_6
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3225..5771)
DNA (2547bp) protein (849aa)
Type-IV secretion system protein TraC n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7R9_9SPHN
Type-IV secretion system protein TraC {ECO:0000313|EMBL:EGD59306.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source
Type-IV secretion system protein TraC
scnpilot_cont_500_p_scaffold_48_7
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5778..6467)
DNA (690bp) protein (230aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7S0_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59305.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
hypothetical protein
scnpilot_cont_500_p_scaffold_48_8
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6471..7364)
DNA (894bp) protein (298aa)
Protein disulfide-isomerase n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7S1_9SPHN rbh
Protein disulfide-isomerase {ECO:0000313|EMBL:EGD59304.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphi
hypothetical protein
scnpilot_cont_500_p_scaffold_48_9
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7381..8745)
DNA (1365bp) protein (455aa)
Sex pilus assembly and synthesis protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7S2_9SPHN
Sex pilus assembly and synthesis protein {ECO:0000313|EMBL:EGD59303.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" sou
TraB pilus assembly family protein
scnpilot_cont_500_p_scaffold_48_10
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8742..9584)
DNA (843bp) protein (281aa)
Putative uncharacterized protein n=2 Tax=Novosphingobium nitrogenifigens RepID=F1Z7S3_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59302.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
hypothetical protein
scnpilot_cont_500_p_scaffold_48_11
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9581..10144)
DNA (564bp) protein (188aa)
Sex pilus assembly and synthesis protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7S4_9SPHN
Sex pilus assembly and synthesis protein {ECO:0000313|EMBL:EGD59301.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" sou
TraE family protein
scnpilot_cont_500_p_scaffold_48_12
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10146..10352)
DNA (207bp) protein (69aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7S5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59300.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
conjugal transfer protein TraL
scnpilot_cont_500_p_scaffold_48_13
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10413..10736)
DNA (324bp) protein (108aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7S6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59298.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
membrane protein
scnpilot_cont_500_p_scaffold_48_14
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11510..12016
DNA (507bp) protein (169aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7S8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59297.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingob
scnpilot_cont_500_p_scaffold_48_15
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12102..12887)
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI000363BB56
Lytic transglycosylase, catalytic {ECO:0000313|EMBL:EGD60597.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="No
hypothetical protein
scnpilot_cont_500_p_scaffold_48_16
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13674..14717)
DNA (1044bp) protein (348aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000382B9E0 rbh
Aromatic-ring-hydroxylating dioxygenase {ECO:0000313|EMBL:EXS72053.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source=
ring hydroxylating alpha subunit family protein
scnpilot_cont_500_p_scaffold_48_17
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14890..15669)
DNA (780bp) protein (260aa)
UPI0003D68B43 related cluster n=1 Tax=unknown RepID=UPI0003D68B43 rbh
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:ETI63678.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp.
short-chain dehydrogenase
scnpilot_cont_500_p_scaffold_48_18
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16251..17564
DNA (1314bp) protein (438aa)
UPI0003D5CB0B related cluster n=1 Tax=unknown RepID=UPI0003D5CB0B rbh
Putative dioxygenase {ECO:0000313|EMBL:KEZ16683.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuy
rieske [2Fe-2S] domain protein
scnpilot_cont_500_p_scaffold_48_19
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17708..18640
DNA (933bp) protein (311aa)
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 (EC:1.14.13.-)
UPI0003D5C777 related cluster n=1 Tax=unknown RepID=UPI0003D5C777 rbh
Phthalate 4,5-dioxygenase {ECO:0000313|EMBL:ETI63676.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium s
scnpilot_cont_500_p_scaffold_48_20
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18719..20047
DNA (1329bp) protein (443aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IMA8_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB10764.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lac
sugar (and other) transporter family protein
scnpilot_cont_500_p_scaffold_48_21
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20050..21678
DNA (1629bp) protein (543aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IGG0_9SPHN rbh
Glucose-methanol-choline oxidoreductase {ECO:0000313|EMBL:KEZ16680.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="S
alkJ; alcohol dehydrogenase acceptor
scnpilot_cont_500_p_scaffold_48_22
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21709..23196
DNA (1488bp) protein (496aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036ED640 rbh
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:KEZ20999.1}; TaxID=13690 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphi
aldehyde dehydrogenase family protein
scnpilot_cont_500_p_scaffold_48_23
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23205..24431)
DNA (1227bp) protein (409aa)
UPI0003D68541 related cluster n=1 Tax=unknown RepID=UPI0003D68541 rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:ETI63671.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="S
LysR family transcriptional regulator
scnpilot_cont_500_p_scaffold_48_24
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24561..25700
DNA (1140bp) protein (380aa)
UPI0003D5F609 related cluster n=1 Tax=unknown RepID=UPI0003D5F609 rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:ETI63670.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp.
Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal
scnpilot_cont_500_p_scaffold_48_25
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25738..26928)
DNA (1191bp) protein (397aa)
Uncharacterized protein n=1 Tax=Sphingobium lactosutens DS20 RepID=T0IMB8_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:EQB10769.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lac
hypothetical protein
scnpilot_cont_500_p_scaffold_48_26
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27040..27777)
DNA (738bp) protein (246aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00036A773B rbh
Uncharacterized protein {ECO:0000313|EMBL:AHE56151.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas s
GntR family transcriptional regulator
scnpilot_cont_500_p_scaffold_48_27
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27909..28655
DNA (747bp) protein (249aa)
Electron transfer flavoprotein, beta subunit n=1 Tax=Sphingobium japonicum BiD32 RepID=N1MRI0_9SPHN rbh
Electron transfer flavoprotein, beta subunit {ECO:0000313|EMBL:CCW19820.1}; TaxID=1301087 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" so
electron transfer flavoprotein subunit beta
scnpilot_cont_500_p_scaffold_48_28
Novosphingobium pentaromativorans, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28657..29586
DNA (930bp) protein (310aa)
Electron transfer flavoprotein alpha-subunit,(ETFLS) n=1 Tax=Novosphingobium pentaromativorans US6-1 RepID=G6EBL9_9SPHN rbh
electron transfer flavoprotein subunit beta
Electron transfer flavoprotein alpha-subunit,(ETFLS) {ECO:0000313|EMBL:EHJ61301.1}; TaxID=1088721 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphin
scnpilot_cont_500_p_scaffold_48_29
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29603..31240
DNA (1638bp) protein (546aa)
etf; electron-transferring-flavoprotein dehydrogenase (EC:1.5.5.1)
Electron-transferring-flavoprotein dehydrogenase n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NAH6_9SPHN rbh
Electron-transferring-flavoprotein dehydrogenase {ECO:0000313|EMBL:EAT08030.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;
scnpilot_cont_500_p_scaffold_48_30
Sphingobium sp. Ant17, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31289..32389)
DNA (1101bp) protein (367aa)
UPI0003D5CF98 related cluster n=1 Tax=unknown RepID=UPI0003D5CF98 rbh
Alcohol dehydrogenase {ECO:0000313|EMBL:EXS71469.1}; TaxID=1461752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. A
alcohol dehydrogenase
Displaying items 1-30 of 171 in total

View Taxonomy