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scnpilot_cont_500_p_scaffold_5

Search features with annotation key words

Displaying items 1-30 of 498 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_cont_500_p_scaffold_5_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..192)
DNA (192bp) protein (64aa)
Porin n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QF48_RHOPT
porin
Porin {ECO:0000313|EMBL:ACE99482.1}; Flags: Precursor;; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomona
scnpilot_cont_500_p_scaffold_5_2
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

627..1121
DNA (495bp) protein (165aa)
single-stranded DNA-binding protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003610B40
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=375 species="Bacteria; Proteobacteria; Alphapr
single-stranded DNA-binding protein
scnpilot_cont_500_p_scaffold_5_3
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1228..1626
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J1ELB1_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJE53036.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.
hypothetical protein
scnpilot_cont_500_p_scaffold_5_4
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1758..4508
DNA (2751bp) protein (917aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiac
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T0W2_9BRAD rbh
scnpilot_cont_500_p_scaffold_5_5
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4625..6532)
DNA (1908bp) protein (636aa)
Probable potassium transport system protein kup n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YHE9_9BRAD rbh
Probable potassium transport system protein kup {ECO:0000256|HAMAP-Rule:MF_01522}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;
trkD; potassium transport protein Kup
scnpilot_cont_500_p_scaffold_5_6
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6787..7041)
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003037C71
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL10291.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium ja
scnpilot_cont_500_p_scaffold_5_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7340..7837
DNA (498bp) protein (166aa)
coaD; phosphopantetheine adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase {ECO:0000255|HAMAP-Rule:MF_00151}; EC=2.7.7.3 {ECO:0000255|HAMAP-Rule:MF_00151};; Dephospho-CoA pyrophosphorylase {ECO:0000255|HAMAP-Rule:MF_00151}; Pantetheine-
Phosphopantetheine adenylyltransferase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=COAD_RHOP5
scnpilot_cont_500_p_scaffold_5_8
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7864..8427
DNA (564bp) protein (188aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brady
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q214P7_RHOPB rbh
cyclophilin type peptidyl-prolyl cis-trans isomerase
scnpilot_cont_500_p_scaffold_5_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8472..8879
DNA (408bp) protein (136aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q137B0_RHOPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE39829.1}; Flags: Precursor;; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" sourc
scnpilot_cont_500_p_scaffold_5_10
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8855..9319
DNA (465bp) protein (155aa)
Peptidyl prolyl cis-trans isomerase (Rotamase B) {ECO:0000313|EMBL:CCE00093.1}; EC=5.2.1.8 {ECO:0000313|EMBL:CCE00093.1};; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobia
ppiB; peptidyl prolyl cis-trans isomerase (EC:5.2.1.8)
Peptidyl prolyl cis-trans isomerase (Rotamase B) n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T0W6_9BRAD rbh
scnpilot_cont_500_p_scaffold_5_11
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9414..10496
DNA (1083bp) protein (361aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};;
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QMG3_NITHX
queA; S-adenosylmethionine--tRNA ribosyltransferase-isomerase
scnpilot_cont_500_p_scaffold_5_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10493..11626
DNA (1134bp) protein (378aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzym
Queuine tRNA-ribosyltransferase n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QIN1_RHOPT rbh
tgt; queuine tRNA-ribosyltransferase
scnpilot_cont_500_p_scaffold_5_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11736..11951)
DNA (216bp) protein (72aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IW40_RHOP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD07570.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas
scnpilot_cont_500_p_scaffold_5_14
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12173..13156
DNA (984bp) protein (328aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; B
Cysteine synthase A n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IN91_9BRAD rbh
cysteine synthase
scnpilot_cont_500_p_scaffold_5_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13187..13429
DNA (243bp) protein (81aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003735547
Uncharacterized protein {ECO:0000313|EMBL:KIZ46491.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas p
hypothetical protein
scnpilot_cont_500_p_scaffold_5_16
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13441..14394)
DNA (954bp) protein (318aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q137A4_RHOPS rbh
Bradyrhizobium elkanii strain UASWS1015 Contig177, whole genome shotgun sequence {ECO:0000313|EMBL:KIU48408.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrh
hypothetical protein
scnpilot_cont_500_p_scaffold_5_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14570..14971
DNA (402bp) protein (134aa)
Endoribonuclease L-PSP n=2 Tax=Rhodopseudomonas palustris RepID=B3QIS9_RHOPT
endoribonuclease protein synthesis inhibitor
Endoribonuclease, protein synthesis inhibitor {ECO:0000313|EMBL:CAE28092.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" so
scnpilot_cont_500_p_scaffold_5_18
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15103..15462)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G7E4_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL76681.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp.
scnpilot_cont_500_p_scaffold_5_19
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15635..16222)
DNA (588bp) protein (196aa)
methionyl-tRNA formyltransferase (EC:2.1.2.9)
Putative Methionyl-tRNA formyltransferase n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SE04_9BRAD rbh
Methionyl-tRNA formyltransferase {ECO:0000313|EMBL:KIZ46488.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseu
scnpilot_cont_500_p_scaffold_5_20
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16569..16982
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P6D9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36284.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717
hypothetical protein
scnpilot_cont_500_p_scaffold_5_21
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17157..17474)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A3X3_STAND
Uncharacterized protein {ECO:0000313|EMBL:EKS33234.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC
hypothetical protein
scnpilot_cont_500_p_scaffold_5_22
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17638..17853)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NJX0_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29391.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
scnpilot_cont_500_p_scaffold_5_23
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18529..21204)
DNA (2676bp) protein (892aa)
Glycosyl transferase, family 2 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QMF4_NITHX rbh
Glycosyl transferase, family 2 {ECO:0000313|EMBL:ABE62593.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" sou
glycosyl transferase family protein
scnpilot_cont_500_p_scaffold_5_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21393..22052)
DNA (660bp) protein (220aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q214N5_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD88151.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" sourc
scnpilot_cont_500_p_scaffold_5_25
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22413..23954
DNA (1542bp) protein (514aa)
Putative beta (1-6) glucans synthase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q214N4_RHOPB rbh
putative beta (1-6) glucans synthase
Putative beta (1-6) glucans synthase {ECO:0000313|EMBL:ABD88152.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudom
scnpilot_cont_500_p_scaffold_5_26
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23914..24294)
DNA (381bp) protein (127aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q214N3_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD88153.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas
scnpilot_cont_500_p_scaffold_5_27
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24395..25618)
DNA (1224bp) protein (408aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IW52_RHOP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD07558.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas
scnpilot_cont_500_p_scaffold_5_28
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25787..27142
DNA (1356bp) protein (452aa)
Bifunctional protein GlmU {ECO:0000255|HAMAP-Rule:MF_01631}; Includes:; UDP-N-acetylglucosamine pyrophosphorylase {ECO:0000255|HAMAP-Rule:MF_01631}; EC=2.7.7.23 {ECO:0000255|HAMAP-Rule:MF_01631};; N-a
Bifunctional protein GlmU n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=GLMU_NITHX
glmU; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase
scnpilot_cont_500_p_scaffold_5_29
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27281..29107
DNA (1827bp) protein (609aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate
glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07MW1_RHOP5 rbh
scnpilot_cont_500_p_scaffold_5_30
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29228..30001
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLP3_NITHX
Membrane protein {ECO:0000313|EMBL:KJC60138.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM
hypothetical protein
Displaying items 1-30 of 498 in total

View Taxonomy
NameRatio
Rhizobiales
94.18%
unknown
3.41%
Rhodobacterales
0.40%
Caulobacterales
0.40%
Burkholderiales
0.40%
Xanthomonadales
0.20%
Streptomycetales
0.20%
Sphingomonadales
0.20%
Rhodocyclales
0.20%
Opitutales
0.20%
Corynebacteriales
0.20%
Rhizobiales: 0.9417670682730924unknown: 0.03413654618473896Burkholderiales: 0.004016064257028112Caulobacterales: 0.004016064257028112Rhodobacterales: 0.004016064257028112Corynebacteriales: 0.002008032128514056Opitutales: 0.002008032128514056Rhodocyclales: 0.002008032128514056Sphingomonadales: 0.002008032128514056Streptomycetales: 0.002008032128514056Xanthomonadales: 0.002008032128514056Rhizobiales