ggKbase home page

scnpilot_cont_500_p_scaffold_251

Search features with annotation key words

Displaying items 1-30 of 103 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_cont_500_p_scaffold_251_1
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..811
DNA (810bp) protein (270aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP
Elongation factor 4 n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JYY8_STEMA
lepA; GTP-binding protein LepA
scnpilot_cont_500_p_scaffold_251_2
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

855..1673
DNA (819bp) protein (273aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1195885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadace
lepB; Signal peptidase I (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8Z7C8_XANCT rbh
scnpilot_cont_500_p_scaffold_251_3
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1701..2069
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003A21B88
Membrane protein {ECO:0000313|EMBL:KGE52836.1}; TaxID=325777 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv
hypothetical protein
scnpilot_cont_500_p_scaffold_251_4
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2074..2736
DNA (663bp) protein (221aa)
ribonuclease 3 (EC:3.1.26.3)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule
Ribonuclease 3 n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JYY5_STEMA rbh
scnpilot_cont_500_p_scaffold_251_5
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2733..3632
DNA (900bp) protein (300aa)
GTPase Era n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KMK4_STEMA rbh
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas;
era; GTP-binding protein Era
scnpilot_cont_500_p_scaffold_251_6
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3687..4409
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000308CDD7 rbh
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=216778 species="Bacteria; Proteobacteria; Gam
recO; DNA repair protein RecO
scnpilot_cont_500_p_scaffold_251_7
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4434..5150)
DNA (717bp) protein (239aa)
Chemotaxis response regulator protein-glutamate methylesterase n=2 Tax=Stenotrophomonas RepID=M5D2A0_STEMA
Response regulator {ECO:0000313|EMBL:EED38067.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas s
response regulator
scnpilot_cont_500_p_scaffold_251_8
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5227..6612
DNA (1386bp) protein (462aa)
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD {ECO:0000256|HAMAP-Rule:MF_01010}; EC=2.1.1.190 {ECO:0000256|HAMAP-Rule:MF_01010};; 23S rRNA(m5U1939)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_0
23S rRNA methyltransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000365455B rbh
23S rRNA (uracil-5-)-methyltransferase RumA
scnpilot_cont_500_p_scaffold_251_9
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6825..7328
DNA (504bp) protein (168aa)
adenylate cyclase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000375071A
CYTH domain protein {ECO:0000313|EMBL:AHY58163.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas
adenylate cyclase
scnpilot_cont_500_p_scaffold_251_10
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7355..8050
DNA (696bp) protein (232aa)
polyketide synthase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F8AE53 rbh
Polyketide synthase {ECO:0000313|EMBL:AHY58164.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas
DSBA oxidoreductase
scnpilot_cont_500_p_scaffold_251_11
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8105..9112
DNA (1008bp) protein (336aa)
Beta-hexosaminidase {ECO:0000256|HAMAP-Rule:MF_00364, ECO:0000256|SAAS:SAAS00015774}; EC=3.2.1.52 {ECO:0000256|HAMAP-Rule:MF_00364, ECO:0000256|SAAS:SAAS00114579};; Beta-N-acetylhexosaminidase {ECO:00
Beta-hexosaminidase n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JYX8_STEMA rbh
beta-hexosaminidase
scnpilot_cont_500_p_scaffold_251_12
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9112..9663
DNA (552bp) protein (184aa)
Hypoxanthine phosphoribosyltransferase n=2 Tax=Stenotrophomonas maltophilia RepID=J7VPS4_STEMA rbh
phosphoribosyltransferase
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:EJP80299.1}; TaxID=1183154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotr
scnpilot_cont_500_p_scaffold_251_13
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9895..10641
DNA (747bp) protein (249aa)
Probable S-methyl-5'-thioinosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963}; EC=2.4.2.44 {ECO:0000256|HAMAP-Rule:MF_01963};; 5'-methylthioinosine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01963};
Probable S-methyl-5'-thioinosine phosphorylase n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=B4SRK1_STRM5 rbh
5'-methylthioadenosine phosphorylase
scnpilot_cont_500_p_scaffold_251_14
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10732..10938
DNA (207bp) protein (69aa)
Cold shock protein n=22 Tax=Xanthomonas RepID=Q5H1P7_XANOR
scoF; cold shock protein
Cold-shock protein {ECO:0000313|EMBL:KGE52849.1}; TaxID=325777 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis
scnpilot_cont_500_p_scaffold_251_15
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11011..12240
DNA (1230bp) protein (410aa)
Oxidoreductase n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7GAZ2_XANCT rbh
Oxidoreductase {ECO:0000313|EMBL:ELQ02447.1}; TaxID=1205753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens DA
oxidoreductase
scnpilot_cont_500_p_scaffold_251_16
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12329..13972
DNA (1644bp) protein (548aa)
acyl-CoA dehydrogenase n=1 Tax=Xanthomonas sp. SHU199 RepID=UPI00037D2F28 rbh
acyl-CoA dehydrogenase
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:AJC45454.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari
scnpilot_cont_500_p_scaffold_251_17
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14088..14483)
DNA (396bp) protein (132aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003056ACD
Stenotrophomonas maltophilia strain ZBG7B contig_25, whole genome shotgun sequence {ECO:0000313|EMBL:KIP86632.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; X
outer membrane lipoprotein
scnpilot_cont_500_p_scaffold_251_18
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14727..15068)
DNA (342bp) protein (114aa)
Uncharacterized protein n=3 Tax=Stenotrophomonas maltophilia RepID=J7VV99_STEMA
outer membrane lipoprotein
Uncharacterized protein {ECO:0000313|EMBL:EJP80288.1}; TaxID=1183154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas malto
scnpilot_cont_500_p_scaffold_251_19
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15191..16366)
DNA (1176bp) protein (392aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:ADV27479.1}; EC=2.3.1.9 {ECO:0000313|EMBL:ADV27479.1};; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonad
acetyl-CoA acetyltransferase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0003067C7B rbh
scnpilot_cont_500_p_scaffold_251_20
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16551..19382
DNA (2832bp) protein (944aa)
peptidase S8 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000362A4E8 rbh
Serine protease {ECO:0000313|EMBL:AHY58179.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhiz
autotransporter-associated beta strand repeat-containing protein
scnpilot_cont_500_p_scaffold_251_21
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19456..20553)
DNA (1098bp) protein (366aa)
glu/leu/phe/val dehydrogenase (EC:1.4.1.-) rbh
Probable glu/leu/phe/val dehydrogenase protein n=1 Tax=Xanthomonas albilineans (strain GPE PC73 / CFBP 7063) RepID=D2U9Q0_XANAP rbh
Leucine dehydrogenase {ECO:0000313|EMBL:AHY58180.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomona
scnpilot_cont_500_p_scaffold_251_22
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20837..24382
DNA (3546bp) protein (1182aa)
NODE_51, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ96002.1}; EC=5.4.99.2 {ECO:0000313|EMBL:KIQ96002.1};; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales;
methylmalonyl-CoA mutase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002EF2F8B rbh
methylmalonyl-CoA mutase
scnpilot_cont_500_p_scaffold_251_23
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24565..26187
DNA (1623bp) protein (541aa)
diguanylate cyclase n=1 Tax=Acidovorax radicis RepID=UPI0002376974 rbh
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
scnpilot_cont_500_p_scaffold_251_24
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26491..27537
DNA (1047bp) protein (349aa)
Probable murein peptide carboxypeptidase n=1 Tax=Rheinheimera nanhaiensis E407-8 RepID=I1DTF7_9GAMM rbh
Microcin C7 resistance protein MccF {ECO:0000313|EMBL:AKC87942.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="
peptidase U61 LD-carboxypeptidase A
scnpilot_cont_500_p_scaffold_251_25
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27643..28983
DNA (1341bp) protein (447aa)
Prolidase {ECO:0000313|EMBL:EGP08491.1}; EC=3.4.13.9 {ECO:0000313|EMBL:EGP08491.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Brad
Prolidase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QKX2_9BRAD
Imidazolonepropionase and related amidohydrolase
scnpilot_cont_500_p_scaffold_251_26
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29080..30597
DNA (1518bp) protein (506aa)
hypothetical protein n=1 Tax=Gilvimarinus chinensis RepID=UPI000369EA8E rbh
Uncharacterized protein {ECO:0000313|EMBL:AKC87077.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxantho
beta-N-acetylhexosaminidase
scnpilot_cont_500_p_scaffold_251_27
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30677..31378
DNA (702bp) protein (234aa)
transcriptional regulator n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E57A31 rbh
Stenotrophomonas maltophilia strain ZBG7B contig_59, whole genome shotgun sequence {ECO:0000313|EMBL:KIP83701.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; X
winged helix family two component transcriptional regulator
scnpilot_cont_500_p_scaffold_251_28
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31375..32778
DNA (1404bp) protein (468aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae;
histidine kinase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00030AA6CB rbh
two-component system, sensor histidine kinase transcriptional regulator
scnpilot_cont_500_p_scaffold_251_29
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32883..35945
DNA (3063bp) protein (1021aa)
histidine kinase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00031EF477 rbh
Histidine kinase {ECO:0000313|EMBL:AHY59653.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhi
two-component system sensor kinase/response regulator fusion protein with GGDEF signalling domain
scnpilot_cont_500_p_scaffold_251_30
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35985..36572)
DNA (588bp) protein (196aa)
Ribonuclease T {ECO:0000256|HAMAP-Rule:MF_00157, ECO:0000256|SAAS:SAAS00051933}; EC=3.1.13.- {ECO:0000256|HAMAP-Rule:MF_00157, ECO:0000256|SAAS:SAAS00051955};; Exoribonuclease T {ECO:0000256|HAMAP-Rul
ribonuclease T n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002E2F82C rbh
ribonuclease T
Displaying items 1-30 of 103 in total

View Taxonomy