ggKbase home page

scnpilot_cont_500_p_scaffold_1205

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_cont_500_p_scaffold_1205_1
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

345..959
DNA (615bp) protein (205aa)
Putative uncharacterized protein n=1 Tax=Mobilicoccus pelagius NBRC 104925 RepID=H5UUC6_9MICO
Uncharacterized protein {ECO:0000313|EMBL:EWC62274.1}; TaxID=909613 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongi
hypothetical protein
scnpilot_cont_500_p_scaffold_1205_2
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(966..1667)
DNA (702bp) protein (234aa)
High-affinity branched-chain amino acid transport ATP-binding protein n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RX29_BLASD
braG2; High-affinity branched-chain amino acid transport ATP-binding protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CEL20289.1}; TaxID=703222 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kibdelosporangium.;" source="Kibdelosporangium
scnpilot_cont_500_p_scaffold_1205_3
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1664..2419)
DNA (756bp) protein (252aa)
Branched-chain amino acid ABC transporter, ATP-binding protein n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RX30_BLASD
Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1) {ECO:0000313|EMBL:CEL20290.1}; TaxID=703222 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kibdel
branched-chain amino acid ABC transporter, ATP-binding protein
scnpilot_cont_500_p_scaffold_1205_4
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2416..3411)
DNA (996bp) protein (332aa)
Amino acid/amide ABC transporter membrane component, HAAT family n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RX31_BLASD rbh
Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) {ECO:0000313|EMBL:CEL20291.1}; TaxID=703222 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Ki
Amino acid/amide ABC transporter membrane component, HAAT family
scnpilot_cont_500_p_scaffold_1205_5
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3408..4265)
DNA (858bp) protein (286aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RX32_BLASD rbh
High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) {ECO:0000313|EMBL:CEL20292.1}; TaxID=703222 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudono
branched-chain amino acid ABC transporter permease
scnpilot_cont_500_p_scaffold_1205_6
Kibdelosporangium sp. MJ126-NF4, Kibdelosporangium, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4333..5541)
DNA (1209bp) protein (403aa)
ABC-type branched-chain amino acid transport systems, extracellular component n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RX33_BLASD rbh
Benzoate transport, extracellular ligand-binding receptor {ECO:0000313|EMBL:CEL20293.1}; TaxID=703222 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Kibdelosporangium.;" sou
ABC-type branched-chain amino acid transport systems, extracellular component
scnpilot_cont_500_p_scaffold_1205_7
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5615..6337
DNA (723bp) protein (241aa)
Beta-lactamase domain protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CN01_PSEUX rbh
beta-lactamase domain-containing protein
Beta-lactamase domain protein {ECO:0000313|EMBL:AEA26014.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivora
scnpilot_cont_500_p_scaffold_1205_8
unknown

Not on your lists

comp(6334..6702)
DNA (369bp) protein (123aa)

This feature has no annotations

scnpilot_cont_500_p_scaffold_1205_9
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6771..7304
DNA (534bp) protein (178aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI0002FE57CE
Carotenoid oxygenase {ECO:0000313|EMBL:ESZ86619.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CA
Lignostilbene-alpha,beta-dioxygenase-related enzymes
scnpilot_cont_500_p_scaffold_1205_10
Streptomyces griseorubens, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7695..8330
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Streptomyces sp. BoleA5 RepID=UPI00036603CA
TetR family transcriptional regulator {ECO:0000313|EMBL:KEG41744.1}; TaxID=66897 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces griseorube
TetR family transcriptional regulator
scnpilot_cont_500_p_scaffold_1205_11
Paenibacillus lactis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(8374..8655)
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Streptomyces RepID=UPI00036B4647
Putative uncharacterized protein {ECO:0000313|EMBL:EHB48912.1}; TaxID=743719 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus lactis 154.;"
hypothetical protein
scnpilot_cont_500_p_scaffold_1205_12
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9235..10410
DNA (1176bp) protein (392aa)
Cell envelope-related transcriptional attenuator n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CN03_PSEUX rbh
cell envelope-related transcriptional attenuator
Cell envelope-related transcriptional attenuator {ECO:0000313|EMBL:AEA26016.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudon
scnpilot_cont_500_p_scaffold_1205_13
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10411..11031)
DNA (621bp) protein (207aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" so
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Frankia sp. CN3 RepID=G6HQ18_9ACTO
FKBP-type peptidylprolyl isomerase
scnpilot_cont_500_p_scaffold_1205_14
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11099..13201
DNA (2103bp) protein (701aa)
Peptidase S9B dipeptidylpeptidase IV domain-containing protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CN05_PSEUX rbh
peptidase S9B dipeptidylpeptidase IV domain-containing protein
Peptidase S9B dipeptidylpeptidase IV domain-containing protein {ECO:0000313|EMBL:AEA26018.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" s
scnpilot_cont_500_p_scaffold_1205_15
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13325..13975)
DNA (651bp) protein (217aa)
UPI0003CFE4A2 related cluster n=1 Tax=unknown RepID=UPI0003CFE4A2
Uncharacterized protein {ECO:0000313|EMBL:ESZ04893.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp.
hypothetical protein
scnpilot_cont_500_p_scaffold_1205_16
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13972..14241)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TC29_9CHLR
Uncharacterized protein {ECO:0000313|EMBL:EWC62333.1}; TaxID=909613 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongi
hypothetical protein
scnpilot_cont_500_p_scaffold_1205_17
Streptomyces roseochromogenus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14234..14578)
DNA (345bp) protein (115aa)
ArsR family transcriptional regulator n=1 Tax=Streptomyces roseochromogenes subsp. oscitans DS 12.976 RepID=V6K365_STRRC
ArsR family transcriptional regulator {ECO:0000313|EMBL:EST25841.1}; TaxID=1352936 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces roseochr
ArsR family transcriptional regulator
scnpilot_cont_500_p_scaffold_1205_18
Streptomyces roseochromogenus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14568..14999)
DNA (432bp) protein (144aa)
ATPase n=1 Tax=Amycolatopsis nigrescens RepID=UPI000363A9AC
ATPase {ECO:0000313|EMBL:EST25842.1}; TaxID=1352936 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces roseochromogenus subsp. oscitans DS 12.
ATPase
scnpilot_cont_500_p_scaffold_1205_19
Rhodococcus sp. BCP1, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15202..15396
DNA (195bp) protein (65aa)
rubredoxin n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE1A4
Rubredoxin {ECO:0000256|RuleBase:RU003820}; TaxID=931223 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus sp. BCP1.;"
rubA; rubredoxin
scnpilot_cont_500_p_scaffold_1205_20
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

15409..16173
DNA (765bp) protein (255aa)
ribonucleotide reductase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE1A3 rbh
Putative ribonucleoside-diphosphate reductase (Beta chain) {ECO:0000313|EMBL:EHN12101.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patu
scnpilot_cont_500_p_scaffold_1205_21
unknown

Not on your lists

comp(16217..16975)
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Actinomycetospora chiangmaiensis RepID=UPI000366CB2F
scnpilot_cont_500_p_scaffold_1205_22
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17579..18040
DNA (462bp) protein (154aa)
multicopper oxidase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE1A1
Uncharacterized protein {ECO:0000313|EMBL:EXG82905.1}; TaxID=927661 species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptosporangium arvum DSM 44712.;"
hypothetical protein
scnpilot_cont_500_p_scaffold_1205_23
Cryptosporangium arvum, Cryptosporangium, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18054..19742
DNA (1689bp) protein (563aa)
alcohol dehydrogenase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE1A0 rbh
PQQ-dependent dehydrogenase, methanol/ethanol family {ECO:0000313|EMBL:EXG82906.1}; TaxID=927661 species="Bacteria; Actinobacteria; Frankiales; Cryptosporangiaceae; Cryptosporangium.;" source="Cryptos
PQQ-dependent dehydrogenase
scnpilot_cont_500_p_scaffold_1205_24
Geodermatophilus obscurus, Geodermatophilus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19964..20851
DNA (888bp) protein (296aa)
Coenzyme PQQ synthesis protein B n=1 Tax=Geodermatophilus obscurus (strain ATCC 25078 / DSM 43160 / JCM 3152 / G-20) RepID=D2S4D4_GEOOG rbh
pyrroloquinoline quinone biosynthesis protein PqqB
Coenzyme PQQ synthesis protein B {ECO:0000256|HAMAP-Rule:MF_00653}; Pyrroloquinoline quinone biosynthesis protein B {ECO:0000256|HAMAP-Rule:MF_00653}; TaxID=526225 species="Bacteria; Actinobacteria; G
scnpilot_cont_500_p_scaffold_1205_25
Streptomyces hygroscopicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20848..21543
DNA (696bp) protein (232aa)
Pyrroloquinoline-quinone synthase {ECO:0000256|HAMAP-Rule:MF_00654}; EC=1.3.3.11 {ECO:0000256|HAMAP-Rule:MF_00654};; Coenzyme PQQ synthesis protein C {ECO:0000256|HAMAP-Rule:MF_00654}; Pyrroloquinolin
pyrroloquinoline quinone biosynthesis protein PqqC n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE19E rbh
pyrroloquinoline quinone biosynthesis protein PqqC
scnpilot_cont_500_p_scaffold_1205_26
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21778..22854
DNA (1077bp) protein (359aa)
pyrroloquinoline quinone biosynthesis protein PqqE n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFE19C rbh
coenzyme PQQ biosynthesis protein E
Coenzyme PQQ synthesis protein E {ECO:0000256|HAMAP-Rule:MF_00660}; Pyrroloquinoline quinone biosynthesis protein E {ECO:0000256|HAMAP-Rule:MF_00660}; TaxID=675635 species="Bacteria; Actinobacteria; P
scnpilot_cont_500_p_scaffold_1205_27
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22857..24209
DNA (1353bp) protein (451aa)
LytTr DNA-binding region n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CTG5_PSEUX
LytTr DNA-binding protein
LytTr DNA-binding region {ECO:0000313|EMBL:AEA27390.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (s
scnpilot_cont_500_p_scaffold_1205_28
Streptomyces hygroscopicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24216..24755)
DNA (540bp) protein (180aa)
membrane protein n=1 Tax=Streptomyces sp. BoleA5 RepID=UPI00037A0638
integral membrane protein
Integral membrane protein {ECO:0000313|EMBL:AEY87703.1}; TaxID=1133850 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces hygroscopicus subsp.
scnpilot_cont_500_p_scaffold_1205_29
Actinosynnema mirum, Actinosynnema, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24954..25328
DNA (375bp) protein (125aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915, ECO:0000256|RuleBase:RU004231}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=446462 species="Bacteria; Actinobacteria; Pseudon
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Actinosynnema mirum (strain ATCC 29888 / DSM 43827 / NBRC 14064 / IMRU 3971) RepID=C6WB30_ACTMD
FKBP-type peptidylprolyl isomerase
scnpilot_cont_500_p_scaffold_1205_30
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25361..25816
DNA (456bp) protein (152aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=1869 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" sourc
Phosphodiesterase, MJ0936 family n=1 Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2PY09_KRIFD
phosphodiesterase, MJ0936 family
Displaying items 1-30 of 32 in total

View Taxonomy