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scnpilot_cont_500_p_scaffold_280_42

Organism: SCNPILOT_CONT_500_P_Pseudonocardia_73_10

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 1
Location: comp(41090..41743)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor SigD n=1 Tax=Sciscionella marina RepID=UPI00035FF7E7 similarity UNIREF
DB: UNIREF100
  • Identity: 53.3
  • Coverage: 180.0
  • Bit_score: 169
  • Evalue 4.50e-39
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 48.8
  • Coverage: 209.0
  • Bit_score: 167
  • Evalue 3.70e-39
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ACU38945.1}; TaxID=446462 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinosynnema.;" source="Actinosyn similarity UNIPROT
DB: UniProtKB
  • Identity: 48.8
  • Coverage: 209.0
  • Bit_score: 167
  • Evalue 1.80e-38

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Taxonomy

Actinosynnema mirum → Actinosynnema → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 654
GTGCGAGTTGCCGGGCACGACGACGACGGCGAGGACATCGAACCGGAGGGGGACCGGGACGACGCAACACGAGCAGCCCGCCGGGAGGCGGAGCTCAACGACCTGGCCGGGAAGGCGGCCGGAGGGGACAAGAGGGCGCTCGAGCGCCTGCTCGCACTGATCCGCACGCCGGTCGTGCGGTACTGCCGGGCACGCATGGGTGACGGGATCGGACTGCTGACCGCGGAGGACGTGGCGCAGGACGTGCTGTTCGCCGTCTGCGGGGCGCTGGCCCGGTTCCGGCCGGGCGAGACGGCCGCGATGGCCTTCGTCTACGGGATCGCCCGCAACAAGGTGGTGGACGCGTTCCGGGCGGGCGGGCGCGACCACTCCGAACCGACCGAGGCCGTCCCGGACGAGGTCGACGACAGGCTCGGACCCGAGGCCGTCGCCGTGTTCGGCACGGAGGTGGGCGAGCTGCGCGACCTGCTCACGCGGCTCCCCCCGGCGCACCGCGAGATCCTGGTGCTGCGGGTCGCGTTGCAGTTCAGCGCGGAGGAGACCGCGGCCGCGGTGGGCTCCACACCGGGGGCCGTGCGCGTCACCCAGCACCGCGCACTGACGAAGCTGCGCACGCTGATCGCCGAGCGGATGAAGGGCGACCAGATGTCGTAG
PROTEIN sequence
Length: 218
VRVAGHDDDGEDIEPEGDRDDATRAARREAELNDLAGKAAGGDKRALERLLALIRTPVVRYCRARMGDGIGLLTAEDVAQDVLFAVCGALARFRPGETAAMAFVYGIARNKVVDAFRAGGRDHSEPTEAVPDEVDDRLGPEAVAVFGTEVGELRDLLTRLPPAHREILVLRVALQFSAEETAAAVGSTPGAVRVTQHRALTKLRTLIAERMKGDQMS*