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scnpilot_cont_500_p_scaffold_1764_9

Organism: SCNPILOT_CONT_500_P_Mesorhizobium_64_5.0

near complete RP 51 / 55 MC: 4 BSCG 50 / 51 MC: 3 ASCG 12 / 38 MC: 2
Location: comp(7718..7963)

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=13 Tax=Mesorhizobium RepID=HFQ_RHILO similarity UNIREF
DB: UNIREF100
  • Identity: 100.0
  • Coverage: 81.0
  • Bit_score: 163
  • Evalue 9.30e-38
RNA chaperone Hfq similarity KEGG
DB: KEGG
  • Identity: 100.0
  • Coverage: 81.0
  • Bit_score: 163
  • Evalue 2.60e-38
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhi similarity UNIPROT
DB: UniProtKB
  • Identity: 100.0
  • Coverage: 81.0
  • Bit_score: 163
  • Evalue 1.30e-37

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Taxonomy

Mesorhizobium sp. LNHC232B00 → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 246
ATGGCGGAACGATCGCAAAATCTTCAGGACCTGTTCCTGAATTCAGTTCGCAAGAGCAAGAACCCACTCACCATTTTTCTCATCAACGGCGTAAAGCTGACCGGCGTGGTCACTTCGTTTGACAATTTCTGCGTCCTGCTGCGCCGAGACGGCCACTCCCAGCTCGTCTACAAGCACGCCATTTCCACGATCATGCCGAGCCAGCCGGTTCAGATGTTCGATGGCGAGGAAAGCCAGGGCGCCTGA
PROTEIN sequence
Length: 82
MAERSQNLQDLFLNSVRKSKNPLTIFLINGVKLTGVVTSFDNFCVLLRRDGHSQLVYKHAISTIMPSQPVQMFDGEESQGA*