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scnpilot_cont_500_p_scaffold_489

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Displaying 26 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_cont_500_p_scaffold_489_1
unknown

Not on your lists

2..73
DNA (72bp) protein (24aa)

This feature has no annotations

scnpilot_cont_500_p_scaffold_489_2
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

249..482
DNA (234bp) protein (78aa)
Putative uncharacterized protein id=4531687 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
hypothetical protein
scnpilot_cont_500_p_scaffold_489_3
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

483..3032
DNA (2550bp) protein (850aa)
Putative uncharacterized protein id=4531688 bin=GWC2_Alphaproteobacteria_42_16 species=ACD17 genus=ACD17 taxon_order=ACD17 taxon_class=ACD17 phylum=Clamydiae tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good + rbh
hypothetical protein; K06919 putative DNA primase/helicase Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
hypothetical protein
scnpilot_cont_500_p_scaffold_489_4
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3025..3492
DNA (468bp) protein (156aa)
id=3549334 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
id=3549334 Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
scnpilot_cont_500_p_scaffold_489_5
RBG_16_Gammaproteobacteria_51_14_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3558..4946
DNA (1389bp) protein (463aa)
Putative transcriptional regulator with HTH domain n=1 Tax=Cyanobium gracile (strain ATCC 27147 / PCC 6307) RepID=K9P7H3_CYAGP rbh
transcriptional regulator with HTH domain Tax=RBG_16_Gammaproteobacteria_51_14_curated
transcriptional regulator with HTH domain
scnpilot_cont_500_p_scaffold_489_6
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5127..7328
DNA (2202bp) protein (734aa)
Conjugal transfer relaxase TraA (Fragment) n=1 Tax=uncultured bacterium RepID=K2EU72_9BACT
conjugal transfer relaxase TraA Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
hypothetical protein
scnpilot_cont_500_p_scaffold_489_7
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7377..7715)
DNA (339bp) protein (113aa)
id=3895500 Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
scnpilot_cont_500_p_scaffold_489_8
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7809..7985)
DNA (177bp) protein (59aa)
id=3895500 Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
id=3895500 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
scnpilot_cont_500_p_scaffold_489_9
Trichomonas vaginalis, Trichomonas, Trichomonadida, Eukaryota

Not on your lists

8235..9437
DNA (1203bp) protein (401aa)
Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis RepID=A2E7B0_TRIVA
Putative uncharacterized protein {ECO:0000313|EMBL:EAY11507.1}; TaxID=5722 species="Eukaryota; Parabasalia; Trichomonadida; Trichomonadidae; Trichomonas.;" source="Trichomonas vaginalis.;"
GDSL-family lipase/acylhydrolase
scnpilot_cont_500_p_scaffold_489_10
Lysinibacillus varians, Lysinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

9590..10144
DNA (555bp) protein (185aa)
suppressor of lin-12 (Sel-1L)
Suppressor of lin-12 (Sel-1L) {ECO:0000313|EMBL:AHN20146.1}; TaxID=1145276 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Lysinibacillus.;" source="Lysinibacillus varians.;"
scnpilot_cont_500_p_scaffold_489_11
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10416..11027)
DNA (612bp) protein (204aa)
id=4199847 bin=GWC2_Alphaproteobacteria_42_16 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
id=4199847 Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
scnpilot_cont_500_p_scaffold_489_12

Not on your lists

comp(11121..14516)
DNA (3396bp) protein (1132aa)
Tetratricopeptide repeat protein n=1 Tax=uncultured bacterium RepID=K2EY05_9BACT
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EKE10469.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
scnpilot_cont_500_p_scaffold_489_13
Candidatus Amoebophilus asiaticus, Candidatus Amoebophilus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

14876..19384
DNA (4509bp) protein (1503aa)
Uncharacterized protein n=1 Tax=Amoebophilus asiaticus (strain 5a2) RepID=B3EU29_AMOA5 rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ACE06731.1}; TaxID=452471 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Amoebophilaceae; Candidatus Amoebophilus.;" source="Amoebophilus asiatic
scnpilot_cont_500_p_scaffold_489_14
unknown

Not on your lists

20104..21843
DNA (1740bp) protein (580aa)

This feature has no annotations

scnpilot_cont_500_p_scaffold_489_15
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22017..22214
DNA (198bp) protein (66aa)
Preprotein translocase subunit SecE id=4429549 bin=GWC2_Alphaproteobacteria_42_16 species=Tistrella mobilis genus=Tistrella taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
preprotein translocase subunit SecE Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
preprotein translocase subunit SecE
scnpilot_cont_500_p_scaffold_489_16
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22222..22758
DNA (537bp) protein (179aa)
Transcription termination/antitermination protein NusG n=1 Tax=uncultured bacterium RepID=K2DX93_9BACT rbh
nusG; transcription antitermination protein NusG; K02601 transcriptional antiterminator NusG Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
antitermination protein NusG
scnpilot_cont_500_p_scaffold_489_17
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


22917..23345
DNA (429bp) protein (143aa)
50S ribosomal protein L11 n=1 Tax=uncultured bacterium RepID=K2ELR4_9BACT
rplK; 50S ribosomal subunit protein L11 Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
50S ribosomal protein L11
scnpilot_cont_500_p_scaffold_489_18
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


23350..24039
DNA (690bp) protein (230aa)
50S ribosomal protein L1 n=1 Tax=uncultured bacterium RepID=K2EJU3_9BACT rbh
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
50S ribosomal protein L1
scnpilot_cont_500_p_scaffold_489_19

Not on your lists


24166..24888
DNA (723bp) protein (241aa)
50S ribosomal protein L10 id=4429541 bin=GWC2_Alphaproteobacteria_42_16 species=Rhodospirillum centenum genus=Rhodospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rplJ; 50S ribosomal subunit protein L10
scnpilot_cont_500_p_scaffold_489_20
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


24919..25299
DNA (381bp) protein (127aa)
50S ribosomal protein L7/L12 n=1 Tax=uncultured bacterium RepID=K2FI40_9BACT
rplL; 50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12 Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
rplL; 50S ribosomal protein L7/L12
scnpilot_cont_500_p_scaffold_489_21
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25452..29624
DNA (4173bp) protein (1391aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta id=4429538 bin=GWC2_Alphaproteobacteria_42_16 species=Magnetospirillum gryphiswaldense genus=Magnetospirillum taxon_order=Rhodospirillales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good + rbh
scnpilot_cont_500_p_scaffold_489_22

Not on your lists

29729..33934
DNA (4206bp) protein (1402aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase
DNA-directed RNA polymerase subunit beta' n=1 Tax=uncultured bacterium RepID=K2DX89_9BACT rbh
DNA-directed RNA polymerase subunit beta'
scnpilot_cont_500_p_scaffold_489_23
R_Alphaproteobacteria_42_30, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


34308..34679
DNA (372bp) protein (124aa)
30S ribosomal protein S12 n=1 Tax=uncultured bacterium RepID=K2ELP9_9BACT
30S ribosomal protein S12; K02950 small subunit ribosomal protein S12 Tax=RIFCSPHIGHO2_02_FULL_Alphaproteobacteria_42_30_curated
30S ribosomal protein S12
scnpilot_cont_500_p_scaffold_489_24

Not on your lists


34692..35162
DNA (471bp) protein (157aa)
30S ribosomal protein S7 id=4429496 bin=GWC2_Alphaproteobacteria_42_16 species=Candidatus Puniceispirillum marinum genus=Candidatus Puniceispirillum taxon_order=unknown taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Alphaproteobacteria_42_16 organism_group=Alphaproteobacteria organism_desc=Rhodospirillales related? Good +
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
rpsG; 30S ribosomal protein S7
scnpilot_cont_500_p_scaffold_489_25

Not on your lists

35178..37253
DNA (2076bp) protein (692aa)
Elongation factor G n=1 Tax=uncultured bacterium RepID=K2EY27_9BACT rbh
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
fusA; elongation factor G
scnpilot_cont_500_p_scaffold_489_26
Reclinomonas americana, Reclinomonas, Eukaryota

Not on your lists

37269..37367
DNA (99bp) protein (33aa)
Elongation factor Tu n=1 Tax=Reclinomonas americana ATCC 50283 RepID=M4QCS6_RECAM
tuf; translation elongation factor Tu
Elongation factor Tu {ECO:0000256|RuleBase:RU004061}; TaxID=1295595 species="Eukaryota; Jakobida; Histionidae; Reclinomonas.;" source="Reclinomonas americana ATCC 50284.;"
Displaying 26 items

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