ggKbase home page

scnpilot_cont_500_p_scaffold_1533

Search features with annotation key words

Displaying items 1-30 of 33 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_cont_500_p_scaffold_1533_1
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..97
DNA (96bp) protein (32aa)
Elongation factor Tu {ECO:0000313|EMBL:KIX43844.1}; EC=3.6.5.3 {ECO:0000313|EMBL:KIX43844.1};; Flags: Fragment;; TaxID=28450 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Bur
Translation elongation factor Tu n=1 Tax=Ralstonia solanacearum FQY_4 RepID=M4UGL0_RALSL
elongation factor Tu C-terminal domain protein
scnpilot_cont_500_p_scaffold_1533_2
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


183..491
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DXE9_9PROT
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrososp
rpsJ; 30S ribosomal protein S10
scnpilot_cont_500_p_scaffold_1533_3
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


611..1336
DNA (726bp) protein (242aa)
50S ribosomal protein L3 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKC2_9PROT rbh
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitro
50S ribosomal protein L3
scnpilot_cont_500_p_scaffold_1533_4
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1333..1959
DNA (627bp) protein (209aa)
50S ribosomal protein L4 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLT6_9PROT rbh
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328, ECO:0000313|EMBL:KIO47949.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitroso
rplD; 50S ribosomal protein L4
scnpilot_cont_500_p_scaffold_1533_5
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1956..2291
DNA (336bp) protein (112aa)
50S ribosomal protein L23 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DMD7_9PROT
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrososp
50S ribosomal protein L23
scnpilot_cont_500_p_scaffold_1533_6
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2292..3125
DNA (834bp) protein (278aa)
50S ribosomal protein L2 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLP0_9PROT rbh
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospi
rplB; 50S ribosomal protein L2
scnpilot_cont_500_p_scaffold_1533_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3132..3419
DNA (288bp) protein (96aa)
30S ribosomal protein S19 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DXF2_9PROT
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531, ECO:0000313|EMBL:KIO47952.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitros
rpsS; 30S ribosomal protein S19
scnpilot_cont_500_p_scaffold_1533_8
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3428..3775
DNA (348bp) protein (116aa)
50S ribosomal protein L22 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKC5_9PROT
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Ni
50S ribosomal protein L22
scnpilot_cont_500_p_scaffold_1533_9
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3790..4710
DNA (921bp) protein (307aa)
30S ribosomal protein S3 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLU0_9PROT rbh
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospi
rpsC; 30S ribosomal protein S3
scnpilot_cont_500_p_scaffold_1533_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4694..5110
DNA (417bp) protein (139aa)
50S ribosomal protein L16 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DME0_9PROT
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitr
rplP; 50S ribosomal protein L16
scnpilot_cont_500_p_scaffold_1533_11
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5112..5306
DNA (195bp) protein (65aa)
50S ribosomal protein L29 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLP4_9PROT
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrososp
50S ribosomal protein L29
scnpilot_cont_500_p_scaffold_1533_12
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5303..5572
DNA (270bp) protein (90aa)
30S ribosomal protein S17 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RS17_NITMU
30S ribosomal protein S17
30S ribosomal protein S17 {ECO:0000255|HAMAP-Rule:MF_01345}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospi
scnpilot_cont_500_p_scaffold_1533_13
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


5771..6139
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RL14_NITMU
50S ribosomal protein L14
50S ribosomal protein L14 {ECO:0000255|HAMAP-Rule:MF_01367}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospi
scnpilot_cont_500_p_scaffold_1533_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6157..6474
DNA (318bp) protein (106aa)
50S ribosomal protein L24 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLU4_9PROT
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326, ECO:0000313|EMBL:KIO47959.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitros
50S ribosomal protein L24
scnpilot_cont_500_p_scaffold_1533_15
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6490..7029
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RL5_NITMU rbh
rplE; 50S ribosomal protein L5
50S ribosomal protein L5 {ECO:0000255|HAMAP-Rule:MF_01333}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospir
scnpilot_cont_500_p_scaffold_1533_16
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7036..7341
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLP9_9PROT
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrososp
30S ribosomal protein S14
scnpilot_cont_500_p_scaffold_1533_17
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7492..7887
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DXG1_9PROT
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302, ECO:0000313|EMBL:KIO47962.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitroso
30S ribosomal protein S8
scnpilot_cont_500_p_scaffold_1533_18
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7898..8431
DNA (534bp) protein (178aa)
50S ribosomal protein L6 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKD6_9PROT
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nit
50S ribosomal protein L6
scnpilot_cont_500_p_scaffold_1533_19
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8443..8799
DNA (357bp) protein (119aa)
50S ribosomal protein L18 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RL18_NITMU
50S ribosomal protein L18
50S ribosomal protein L18 {ECO:0000255|HAMAP-Rule:MF_01337}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospi
scnpilot_cont_500_p_scaffold_1533_20
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8814..9356
DNA (543bp) protein (181aa)
30S ribosomal protein S5 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DME6_9PROT rbh
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nit
rpsE; 30S ribosomal protein S5
scnpilot_cont_500_p_scaffold_1533_21
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9353..9541
DNA (189bp) protein (63aa)
50S ribosomal protein L30 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLQ4_9PROT
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Ni
50S ribosomal protein L30
scnpilot_cont_500_p_scaffold_1533_22
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9542..9973
DNA (432bp) protein (144aa)
50S ribosomal protein L15 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DXG5_9PROT
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitr
50S ribosomal protein L15
scnpilot_cont_500_p_scaffold_1533_23
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9991..11319
DNA (1329bp) protein (443aa)
Protein translocase subunit SecY n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKE0_9PROT rbh
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Ni
secY; preprotein translocase subunit SecY
scnpilot_cont_500_p_scaffold_1533_24
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11334..11552
DNA (219bp) protein (73aa)
Translation initiation factor IF-1 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLV1_9PROT
infA; translation initiation factor IF-1
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="
scnpilot_cont_500_p_scaffold_1533_25
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11737..12117
DNA (381bp) protein (127aa)
30S ribosomal protein S13 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLQ8_9PROT
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315, ECO:0000313|EMBL:KIO47970.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitros
rpsM; 30S ribosomal protein S13
scnpilot_cont_500_p_scaffold_1533_26
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12157..12546
DNA (390bp) protein (130aa)
30S ribosomal protein S11 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DXH0_9PROT
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrososp
30S ribosomal protein S11
scnpilot_cont_500_p_scaffold_1533_27
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12556..13182
DNA (627bp) protein (209aa)
30S ribosomal protein S4 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DKE4_9PROT rbh
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306, ECO:0000313|EMBL:KIO47978.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitroso
rpsD; 30S ribosomal protein S4
scnpilot_cont_500_p_scaffold_1533_28
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13217..14221
DNA (1005bp) protein (335aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLV5_9PROT rbh
scnpilot_cont_500_p_scaffold_1533_29
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


14208..14606
DNA (399bp) protein (133aa)
50S ribosomal protein L17 n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=RL17_NITMU
50S ribosomal protein L17
50S ribosomal protein L17 {ECO:0000255|HAMAP-Rule:MF_01368}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospi
scnpilot_cont_500_p_scaffold_1533_30
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14848..15165
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DLR2_9PROT
Uncharacterized protein {ECO:0000313|EMBL:CCU63954.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira la
hypothetical protein
Displaying items 1-30 of 33 in total

View Taxonomy