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scnpilot_cont_500_p_scaffold_2338

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Displaying 24 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_cont_500_p_scaffold_2338_1
Vibrio cholerae, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(192..3107)
DNA (2916bp) protein (972aa)
RNA polymerase associated protein RapA {ECO:0000313|EMBL:CQB48781.1}; EC=3.6.1.- {ECO:0000313|EMBL:CQB48781.1};; TaxID=666 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibriona
Helicase domain protein n=1 Tax=Pseudomonas sp. CF161 RepID=S6L0F6_9PSED rbh
SNF2 family helicase-like protein
scnpilot_cont_500_p_scaffold_2338_2
unknown

Not on your lists

3370..3570
DNA (201bp) protein (67aa)

This feature has no annotations

scnpilot_cont_500_p_scaffold_2338_3
unknown

Not on your lists

comp(3873..4421)
DNA (549bp) protein (183aa)

This feature has no annotations

scnpilot_cont_500_p_scaffold_2338_4
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4813..6024
DNA (1212bp) protein (404aa)
Major facilitator superfamily MFS_1 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGZ0_9PROT rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CCU61744.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nit
major facilitator transporter
scnpilot_cont_500_p_scaffold_2338_5
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6212..6751
DNA (540bp) protein (180aa)
Thiol peroxidase, Bcp-type n=1 Tax=Nitrosospira sp. APG3 RepID=M5DQR3_9PROT
Alkyl hydroperoxide reductase {ECO:0000313|EMBL:KIO49513.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospir
Alkyl hydroperoxide reductase/Thiol specific antioxidant/Mal allergen
scnpilot_cont_500_p_scaffold_2338_6
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6873..7268
DNA (396bp) protein (132aa)
Transcriptional regulator, TraR/DksA family n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YD37_NITMU
TraR/DksA family transcriptional regulator
Transcriptional regulator, TraR/DksA family {ECO:0000313|EMBL:ABB73334.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" sour
scnpilot_cont_500_p_scaffold_2338_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7348..7950)
DNA (603bp) protein (201aa)
Smr domain n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH44_9PROT
DNA mismatch repair protein MutS {ECO:0000313|EMBL:KIO49511.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosos
Smr protein/MutS2
scnpilot_cont_500_p_scaffold_2338_8
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8106..8927)
DNA (822bp) protein (274aa)
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonada
Thioredoxin reductase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YD39_NITMU rbh
thioredoxin reductase
scnpilot_cont_500_p_scaffold_2338_9
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9031..11673)
DNA (2643bp) protein (881aa)
alaS; alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00036}; EC=6.1.1.7 {ECO:0000255|HAMAP-Rule:MF_00036};; Alanyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00036}; Short=AlaRS {ECO:0000255|HAMAP-Rule:MF_
Alanine--tRNA ligase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=SYA_NITMU rbh
scnpilot_cont_500_p_scaffold_2338_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11690..12055)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DQR8_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIO49508.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
hypothetical protein
scnpilot_cont_500_p_scaffold_2338_11
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12052..12510)
DNA (459bp) protein (153aa)
Regulatory protein RecX n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFB6_9PROT
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitr
regulatory protein RecX
scnpilot_cont_500_p_scaffold_2338_12
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12539..13558)
DNA (1020bp) protein (340aa)
Protein RecA n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH48_9PROT rbh
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1288494 species="Bacteria; Proteoba
recA; recombinase A
scnpilot_cont_500_p_scaffold_2338_13
Chlorobium ferrooxidans, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(13737..15065)
DNA (1329bp) protein (443aa)
TPR repeat:Tetratricopeptide TPR_3 n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YRV9_9CHLB
TPR repeat:Tetratricopeptide TPR_3 {ECO:0000313|EMBL:EAT59028.1}; TaxID=377431 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="
TPR repeat-containing protein
scnpilot_cont_500_p_scaffold_2338_14
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15228..15860
DNA (633bp) protein (211aa)
UPF0114 protein EBAPG3_7810 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DQS3_9PROT rbh
UPF0114 protein EBAPG3_7810 {ECO:0000256|HAMAP-Rule:MF_00143}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitroso
hypothetical protein
scnpilot_cont_500_p_scaffold_2338_15
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15932..16441)
DNA (510bp) protein (170aa)
CinA-like protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YD47_NITMU
Damage-inducible protein CinA {ECO:0000313|EMBL:KIO49505.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospir
CinA-like protein
scnpilot_cont_500_p_scaffold_2338_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16555..17139)
DNA (585bp) protein (195aa)
Phosphatidylglycerophosphatase A {ECO:0000256|PIRNR:PIRNR006162}; EC=3.1.3.27 {ECO:0000256|PIRNR:PIRNR006162};; Phosphatidylglycerolphosphate phosphatase A {ECO:0000256|PIRNR:PIRNR006162}; TaxID=58133
Phosphatidylglycerophosphatase A n=1 Tax=Nitrosospira sp. APG3 RepID=M5DH50_9PROT
phosphatidylglycerophosphatase A
scnpilot_cont_500_p_scaffold_2338_17
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17120..18094)
DNA (975bp) protein (325aa)
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {E
thiamine-monophosphate kinase (EC:2.7.4.16)
Thiamine-monophosphate kinase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHF7_9PROT rbh
scnpilot_cont_500_p_scaffold_2338_18
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18110..18580)
DNA (471bp) protein (157aa)
N utilization substance protein B homolog n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGZ7_9PROT
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=58133 species="Bacteria; Proteo
NusB antitermination factor
scnpilot_cont_500_p_scaffold_2338_19
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18580..19062)
DNA (483bp) protein (161aa)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DQS4_9PROT
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00
6,7-dimethyl-8-ribityllumazine synthase
scnpilot_cont_500_p_scaffold_2338_20
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19084..20205)
DNA (1122bp) protein (374aa)
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II {ECO:0000313|EMBL:CCU61761.1}; EC=3.5.4.25 {ECO:0000313|EMBL:CCU61761.1};; EC=4.1.99.12 {ECO:0000313|EMBL:CCU61761.1};; TaxID=1288
bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein (EC:3.5.4.25)
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFB8_9PROT rbh
scnpilot_cont_500_p_scaffold_2338_21
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20221..20814)
DNA (594bp) protein (198aa)
riboflavin synthase subunit alpha (EC:2.5.1.9)
Riboflavin synthase, alpha subunit n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YD53_NITMU
Riboflavin synthase subunit alpha {ECO:0000313|EMBL:KIO49499.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitroso
scnpilot_cont_500_p_scaffold_2338_22
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20992..22251
DNA (1260bp) protein (420aa)
Sensor histidine kinase PrrB (RegB) n=1 Tax=Nitrosospira sp. APG3 RepID=M5DHG0_9PROT rbh
Histidine kinase {ECO:0000313|EMBL:KIO49498.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
periplasmic sensor signal transduction histidine kinase
scnpilot_cont_500_p_scaffold_2338_23
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22254..22820
DNA (567bp) protein (189aa)
Two component transcriptional regulator, Fis family n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YD55_NITMU rbh
two component Fis family transcriptional regulator
Two component transcriptional regulator, Fis family {ECO:0000313|EMBL:ABB73316.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira
scnpilot_cont_500_p_scaffold_2338_24
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23107..23250)
DNA (144bp) protein (48aa)
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="N
Displaying 24 items

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