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scnpilot_cont_500_p_scaffold_220

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Displaying items 1-30 of 55 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_cont_500_p_scaffold_220_1
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


239..1945
DNA (1707bp) protein (569aa)
prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_01569}; EC=6.1.1.15 {ECO:0000255|HAMAP-Rule:MF_01569};; Prolyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_01569}; Short=ProRS {ECO:0000255|HAMAP-Rule:MF
Proline--tRNA ligase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=SYP_NITMU rbh
scnpilot_cont_500_p_scaffold_220_2
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2009..2518)
DNA (510bp) protein (170aa)
Thiol-disulfide isomerase and thioredoxins-like n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF45_9PROT
Thiol-disulfide isomerase and thioredoxins-like {ECO:0000313|EMBL:CCU61396.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;"
Thiol-disulfide isomerase-like protein
scnpilot_cont_500_p_scaffold_220_3
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2524..3828)
DNA (1305bp) protein (435aa)
UPF0761 membrane protein EBAPG3_4120 n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGA3_9PROT rbh
UPF0761 membrane protein EBAPG3_4120 {ECO:0000256|HAMAP-Rule:MF_00672}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source
ribonuclease BN
scnpilot_cont_500_p_scaffold_220_4
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3996..5528)
DNA (1533bp) protein (511aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00049060}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00085331};; Alpha-IPM synthase {ECO:0000
2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGM8_9PROT rbh
scnpilot_cont_500_p_scaffold_220_5
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5862..6485
DNA (624bp) protein (208aa)
Electron transport protein SCO1/SenC n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBV9_NITMU
Electron transporter {ECO:0000313|EMBL:KIO50538.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpA
electron transport protein SCO1/SenC
scnpilot_cont_500_p_scaffold_220_6
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6550..7371
DNA (822bp) protein (274aa)
Putative membrane protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBV8_NITMU rbh
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:ABB73763.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira m
scnpilot_cont_500_p_scaffold_220_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7436..8722)
DNA (1287bp) protein (429aa)
Cytochrome c, class I n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBV7_NITMU rbh
Alcohol dehydrogenase {ECO:0000313|EMBL:KIO50537.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. Np
cytochrome c, class I
scnpilot_cont_500_p_scaffold_220_8
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8747..9130)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBV6_NITMU
Uncharacterized protein {ECO:0000313|EMBL:KIO50415.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
hypothetical protein
scnpilot_cont_500_p_scaffold_220_9
Methylomicrobium album, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9201..9800)
DNA (600bp) protein (200aa)
Heme/copper-type cytochrome/quinol oxidase, subunit 3 n=1 Tax=Methylomicrobium album BG8 RepID=H8GMK4_METAL
Heme/copper-type cytochrome/quinol oxidase, subunit 3 {ECO:0000313|EMBL:EIC28244.1}; TaxID=686340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicr
putative cytochrome c oxidase subunit I
scnpilot_cont_500_p_scaffold_220_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9793..11787)
DNA (1995bp) protein (665aa)
cytochrome-c oxidase (EC:1.9.3.1)
Cytochrome-c oxidase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBV4_NITMU rbh
Cytochrome C oxidase {ECO:0000313|EMBL:KIO50413.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpA
scnpilot_cont_500_p_scaffold_220_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11798..12832)
DNA (1035bp) protein (345aa)
Cytochrome c oxidase, subunit II n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBV3_NITMU rbh
Cytochrome C {ECO:0000313|EMBL:KIO50412.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
cytochrome c oxidase subunit II
scnpilot_cont_500_p_scaffold_220_12
Methylomicrobium album, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12906..14672)
DNA (1767bp) protein (589aa)
thiamine pyrophosphate protein (EC:1.2.2.2)
thiamine pyrophosphate protein n=1 Tax=Methylosarcina fibrata RepID=UPI0003740D5E rbh
Thiamine pyrophosphate-dependent enzyme, possible carboligase or decarboxylase {ECO:0000313|EMBL:EIC31082.1}; TaxID=686340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Meth
scnpilot_cont_500_p_scaffold_220_13
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15166..16803)
DNA (1638bp) protein (546aa)
Uncharacterized protein n=1 Tax=Nitrosospira sp. APG3 RepID=M5DPL1_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCU61400.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira la
hypothetical protein
scnpilot_cont_500_p_scaffold_220_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17348..17680)
DNA (333bp) protein (111aa)
Uncharacterized protein {ECO:0000313|EMBL:KIO50411.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp.
scnpilot_cont_500_p_scaffold_220_15
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17762..18148)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBU9_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB73772.1}; Flags: Precursor;; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" sourc
scnpilot_cont_500_p_scaffold_220_16
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18565..19443)
DNA (879bp) protein (293aa)
carbonate dehydratase (EC:4.2.1.1)
Carbonic anhydrase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF47_9PROT rbh
Carbonate dehydratase {ECO:0000313|EMBL:KIO50409.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. Np
scnpilot_cont_500_p_scaffold_220_17
unknown

Not on your lists

19501..19623
DNA (123bp) protein (41aa)

This feature has no annotations

scnpilot_cont_500_p_scaffold_220_18
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19730..21136)
DNA (1407bp) protein (469aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0
glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49)
Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGB0_9PROT rbh
scnpilot_cont_500_p_scaffold_220_19
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21136..22152)
DNA (1017bp) protein (339aa)
6-phosphogluconate dehydrogenase, decarboxylating {ECO:0000313|EMBL:CCU61408.1}; EC=1.1.1.44 {ECO:0000313|EMBL:CCU61408.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitros
6-phosphogluconate dehydrogenase, decarboxylating (EC:1.1.1.44)
6-phosphogluconate dehydrogenase, decarboxylating n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGN4_9PROT rbh
scnpilot_cont_500_p_scaffold_220_20
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22292..23971)
DNA (1680bp) protein (560aa)
phosphoglucomutase (EC:5.4.2.2)
Phosphoglucomutase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DG28_9PROT rbh
Phosphoglucomutase {ECO:0000313|EMBL:KIO50406.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.
scnpilot_cont_500_p_scaffold_220_21
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24145..25821)
DNA (1677bp) protein (559aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|R
pgi; glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF48_9PROT rbh
scnpilot_cont_500_p_scaffold_220_22
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26182..26949)
DNA (768bp) protein (256aa)
CDP-diacylglycerol--serine O-phosphatidyltransferase {ECO:0000313|EMBL:CCU61413.1}; EC=2.7.8.8 {ECO:0000313|EMBL:CCU61413.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitr
CDP-diacylglycerol--serine O-phosphatidyltransferase (EC:2.7.8.8)
CDP-diacylglycerol--serine O-phosphatidyltransferase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGN7_9PROT rbh
scnpilot_cont_500_p_scaffold_220_23
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27133..28149)
DNA (1017bp) protein (339aa)
ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase {ECO:0000255|HAMAP-Rule:MF_00435}; EC=1.1.1.86 {ECO:0000255|HAMAP-Rule:MF_00435};; Acetohydroxy-acid isomeroreductase {ECO:0000255|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hyd
Ketol-acid reductoisomerase n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=ILVC_NITMU rbh
scnpilot_cont_500_p_scaffold_220_24
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28513..29004)
DNA (492bp) protein (164aa)
Acetolactate synthase, small subunit n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2YBU0_NITMU
Acetolactate synthase {ECO:0000313|EMBL:KIO50404.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. Np
acetolactate synthase, small subunit
scnpilot_cont_500_p_scaffold_220_25
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29007..30710)
DNA (1704bp) protein (568aa)
Acetolactate synthase large subunit {ECO:0000313|EMBL:CCU61417.1}; EC=2.2.1.6 {ECO:0000313|EMBL:CCU61417.1};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nit
Acetolactate synthase large subunit n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGB6_9PROT rbh
acetolactate synthase, large subunit, biosynthetic type
scnpilot_cont_500_p_scaffold_220_26
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31044..31499)
DNA (456bp) protein (152aa)
Ferric uptake regulation protein FUR n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGP1_9PROT
Ferric uptake regulation protein FUR {ECO:0000313|EMBL:CCU61418.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Ni
ferric uptake regulator family protein
scnpilot_cont_500_p_scaffold_220_27
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32026..32733
DNA (708bp) protein (236aa)
Outer membrane protein assembly factor BamE n=1 Tax=Nitrosospira sp. APG3 RepID=M5DG37_9PROT
Outer membrane protein assembly factor BamE {ECO:0000256|HAMAP-Rule:MF_00925}; Flags: Precursor;; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadace
SmpA/OmlA
scnpilot_cont_500_p_scaffold_220_28
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32787..33593
DNA (807bp) protein (269aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rul
dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Nitrosospira sp. APG3 RepID=M5DPN3_9PROT rbh
scnpilot_cont_500_p_scaffold_220_29
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33752..34897
DNA (1146bp) protein (382aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_012
Carbamoyl-phosphate synthase small chain n=1 Tax=Nitrosospira sp. APG3 RepID=M5DF50_9PROT rbh
carbamoyl-phosphate synthase, small subunit
scnpilot_cont_500_p_scaffold_220_30
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34944..38282
DNA (3339bp) protein (1113aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria;
Carbamoyl-phosphate synthase large chain n=1 Tax=Nitrosospira sp. APG3 RepID=M5DGC2_9PROT rbh
carbamoyl-phosphate synthase, large subunit
Displaying items 1-30 of 55 in total

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