ggKbase home page

scnpilot_cont_500_p_scaffold_2353

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_cont_500_p_scaffold_2353_1
unknown

Not on your lists

3..5237
DNA (5235bp) protein (1745aa)

This feature has no annotations

scnpilot_cont_500_p_scaffold_2353_2
Acanthamoeba castellanii, Acanthamoeba, Longamoebia, Eukaryota

Not on your lists

5194..10395
DNA (5202bp) protein (1734aa)
RhoGEF domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff RepID=L8GZK0_ACACA
RhoGEF domain containing protein
RhoGEF domain containing protein {ECO:0000313|EMBL:ELR18659.1}; TaxID=1257118 species="Eukaryota; Amoebozoa; Discosea; Longamoebia; Centramoebida; Acanthamoebidae; Acanthamoeba.;" source="Acanthamoeba
scnpilot_cont_500_p_scaffold_2353_3
Thiocystis violascens, Thiocystis, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10404..10679)
DNA (276bp) protein (92aa)
Phosphotransferase system HPr (HPr) family protein n=1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3YB22_THIV6
phosphotransferase system HPr (HPr) family protein
Phosphotransferase system HPr (HPr) family protein {ECO:0000313|EMBL:AFL74190.1}; TaxID=765911 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocystis.;" source
scnpilot_cont_500_p_scaffold_2353_4
Ectothiorhodospira sp. PHS-1, Ectothiorhodospira, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10676..11155)
DNA (480bp) protein (160aa)
PTS mannose transporter subunit IIA n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00036F2F6C
PTS system fructose subfamily IIA component {ECO:0000313|EMBL:EHQ51365.1}; TaxID=519989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Ectothiorhodospira
PTS fructose transporter subunit IIA
scnpilot_cont_500_p_scaffold_2353_5
Rheinheimera nanhaiensis, Rheinheimera, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11152..12000)
DNA (849bp) protein (283aa)
UPF0042 nucleotide-binding protein RNAN_1819 n=1 Tax=Rheinheimera nanhaiensis E407-8 RepID=I1DXQ3_9GAMM
Nucleotide-binding protein RNAN_1819 {ECO:0000256|HAMAP-Rule:MF_00636}; TaxID=562729 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Rheinheimera.;" source="Rheinh
hypothetical protein
scnpilot_cont_500_p_scaffold_2353_6
Facklamia hominis, Facklamia, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12261..12758)
DNA (498bp) protein (166aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SA
HPr kinase/phosphorylase n=2 Tax=Facklamia hominis RepID=K1MFZ4_9LACT
HPr kinase
scnpilot_cont_500_p_scaffold_2353_7
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12751..13203)
DNA (453bp) protein (151aa)
PtsN protein {ECO:0000313|EMBL:KIR20008.1}; EC=2.7.1.- {ECO:0000313|EMBL:KIR20008.1};; TaxID=294 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.
PTS fructose transporter subunit IIA n=1 Tax=Pseudomonas psychrophila RepID=UPI0002EB2628
PTS fructose transporter subunit IIA
scnpilot_cont_500_p_scaffold_2353_8
Nitrincola sp. AK23, Nitrincola, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13321..13632)
DNA (312bp) protein (104aa)
Sigma 54 modulation protein/ribosomal protein S30EA n=1 Tax=Thiorhodospira sibirica ATCC 700588 RepID=G4E7R0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EXJ12717.1}; TaxID=1229521 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Nitrincola.;" source="Nitrincola sp. AK23.;"
sigma 54 modulation protein/ribosomal protein S30EA
scnpilot_cont_500_p_scaffold_2353_9
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13654..15081)
DNA (1428bp) protein (476aa)
RNA polymerase factor sigma-54 (EC:2.7.7.6)
RNA polymerase factor sigma-54 n=1 Tax=Hahella ganghwensis RepID=UPI00037053C2
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=1005395 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomo
scnpilot_cont_500_p_scaffold_2353_10
Alishewanella jeotgali, Alishewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15243..15968)
DNA (726bp) protein (242aa)
lipopolysaccharide ABC transporter ATP-binding protein n=1 Tax=Amphritea japonica RepID=UPI0003682D71
ABC transporter-like protein {ECO:0000313|EMBL:EHR41476.1}; TaxID=1129374 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Alishewanella.;" source="Alishewane
putative ABC transporter ATP-binding protein
scnpilot_cont_500_p_scaffold_2353_11
Pseudomonas sp. HPB0071, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15965..16624)
DNA (660bp) protein (220aa)
Lipopolysaccharide transport periplasmic protein LptA n=1 Tax=Pseudomonas sp. HPB0071 RepID=N2JCW1_9PSED
Lipopolysaccharide export system protein LptA {ECO:0000256|HAMAP-Rule:MF_01914}; Flags: Precursor;; TaxID=1203578 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadac
lipopolysaccharide transport periplasmic protein LptA
scnpilot_cont_500_p_scaffold_2353_12
unknown

Not on your lists

comp(16605..17192)
DNA (588bp) protein (196aa)

This feature has no annotations

scnpilot_cont_500_p_scaffold_2353_13
Nitrosococcus watsonii, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17203..18201)
DNA (999bp) protein (333aa)
KpsF/GutQ family protein (EC:5.3.1.13)
Arabinose 5-phosphate isomerase {ECO:0000256|PIRNR:PIRNR004692}; Short=API {ECO:0000256|PIRNR:PIRNR004692};; EC=5.3.1.13 {ECO:0000256|PIRNR:PIRNR004692};; TaxID=105559 species="Bacteria; Proteobacteri
Arabinose 5-phosphate isomerase n=1 Tax=Nitrosococcus watsoni (strain C-113) RepID=D8K9I1_NITWC rbh
scnpilot_cont_500_p_scaffold_2353_14
Grimontia hollisae, Grimontia, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18553..18888
DNA (336bp) protein (112aa)
Uncharacterized ABC transporter ATP-binding protein YrbF n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I505_GRIHO
Uncharacterized ABC transporter ATP-binding protein YrbF {ECO:0000313|EMBL:EEY73572.1}; TaxID=675812 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Grimontia.;" sou
organic solvents resistance ABC transporter ATPase
Displaying 14 items

View Taxonomy