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SCNPILOT_CONT_500_P_Legionella_38_3_partial

SCNPILOT_CONT_500_P_Gammaproteobacteria_38_3
In projects: SCNPILOT_CONT_500_P

Consensus taxonomy: Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_cont_500_p_UNK

Properties

Avg. coverage: 3.36 Longest contig: 36.22 Kbp Bin length: 3.60 Mbp GC content: 38.44 %
Contigs count: 450 Features count: 3553 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 32 / 55 MC: 2 BSCG 33 / 51 MC: 3 ASCG 11 / 38 MC: 2

Description

highly fragmented, from ESOM

Displaying items 301-350 of 450 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_cont_500_p_scaffold_7718
Phylum: Proteobacteria (50%)
6 5226 bp 38.88 3.27 79.85
scnpilot_cont_500_p_scaffold_5273
Species: Acinetobacter sp. NIPH 284 (50%)
6 7293 bp 35.90 2.14 96.05
scnpilot_cont_500_p_scaffold_7722
Genus: Legionella (50%)
6 5224 bp 36.58 2.70 91.88
scnpilot_cont_500_p_scaffold_7211
Species: Legionella drancourtii (83.33%)
6 5513 bp 39.16 3.21 98.00
scnpilot_cont_500_p_scaffold_7469
Species: Acinetobacter sp. NIPH 236 (50%)
6 5369 bp 40.03 2.01 87.17
scnpilot_cont_500_p_scaffold_7475
Species: Legionella pneumophila (66.67%)
6 5366 bp 39.82 3.05 83.41
scnpilot_cont_500_p_scaffold_6337
Class: Gammaproteobacteria (66.67%)
6 6189 bp 39.36 2.96 96.17
scnpilot_cont_500_p_scaffold_6852
Species: Legionella longbeachae (83.33%)
6 5758 bp 39.42 2.66 87.27
scnpilot_cont_500_p_scaffold_5552
Class: Gammaproteobacteria (100%)
6 6976 bp 40.28 2.77 92.72
scnpilot_cont_500_p_scaffold_11615
Class: Gammaproteobacteria (50%)
6 5758 bp 36.42 3.70 75.03
scnpilot_cont_500_p_scaffold_6866
Class: Gammaproteobacteria (66.67%)
6 5741 bp 37.45 3.16 88.42
scnpilot_cont_500_p_scaffold_6612
Species: Legionella longbeachae (50%)
6 5957 bp 37.33 3.75 78.41
scnpilot_cont_500_p_scaffold_6621
Phylum: Proteobacteria (50%)
6 5948 bp 39.43 4.06 88.92
scnpilot_cont_500_p_scaffold_15032
Species: Sphingobacterium sp. ML3W (66.67%)
6 5895 bp 43.43 2.49 73.13
scnpilot_cont_500_p_scaffold_6121
Species: Legionella longbeachae (66.67%)
6 6385 bp 37.09 3.41 91.06
scnpilot_cont_500_p_scaffold_5076
Genus: Legionella (100%)
6 7544 bp 38.30 3.26 85.06
scnpilot_cont_500_p_scaffold_7270
Class: Gammaproteobacteria (50%)
6 6487 bp 39.54 6.27 86.02
scnpilot_cont_500_p_scaffold_7015
Genus: Legionella (50%)
6 5642 bp 40.23 3.43 78.86
scnpilot_cont_500_p_scaffold_5596
Species: Legionella longbeachae (50%)
6 6923 bp 38.81 2.99 90.70
scnpilot_cont_500_p_scaffold_6900
Class: Gammaproteobacteria (50%)
6 5718 bp 37.76 2.57 84.89
scnpilot_cont_500_p_scaffold_10254
Class: Gammaproteobacteria (50%)
6 6036 bp 37.61 4.03 86.73
scnpilot_cont_500_p_scaffold_5600
Species: Legionella longbeachae (83.33%)
6 6918 bp 41.31 2.86 92.67
scnpilot_cont_500_p_scaffold_8010
Species: Legionella longbeachae (100%)
6 5079 bp 42.31 2.95 88.30
scnpilot_cont_500_p_scaffold_5603
Species: Acinetobacter sp. NIPH 236 (66.67%)
6 6915 bp 35.82 2.23 94.71
scnpilot_cont_500_p_scaffold_7797
Genus: Legionella (83.33%)
6 5187 bp 35.70 3.41 81.55
scnpilot_cont_500_p_scaffold_6654
Phylum: Proteobacteria (50%)
6 5918 bp 40.37 3.85 72.90
scnpilot_cont_500_p_scaffold_6399
Genus: Legionella (50%)
6 6130 bp 38.53 3.28 92.79
scnpilot_cont_500_p_scaffold_5096
Genus: Legionella (66.67%)
6 7512 bp 38.49 2.36 85.38
scnpilot_cont_500_p_scaffold_7288
Class: Gammaproteobacteria (50%)
6 5470 bp 37.73 2.99 93.56
scnpilot_cont_500_p_scaffold_6657
Domain: Bacteria (100%)
6 5914 bp 39.58 3.58 88.98
scnpilot_cont_500_p_scaffold_7294
Genus: Legionella (83.33%)
6 5466 bp 38.75 3.49 90.56
scnpilot_cont_500_p_scaffold_7043
Class: Gammaproteobacteria (50%)
6 5626 bp 38.78 2.77 83.40
scnpilot_cont_500_p_scaffold_6674
Phylum: Proteobacteria (50%)
6 5898 bp 34.76 3.66 94.71
scnpilot_cont_500_p_scaffold_5371
Species: R_Alphaproteobacteria_42_30 (50%)
6 7170 bp 39.30 3.26 86.44
scnpilot_cont_500_p_scaffold_7311
Species: Acinetobacter sp. ANC 3862 (50%)
6 5454 bp 36.43 2.75 83.06
scnpilot_cont_500_p_scaffold_7060
Species: Legionella longbeachae (66.67%)
6 5615 bp 40.16 2.32 84.95
scnpilot_cont_500_p_scaffold_6691
Class: Gammaproteobacteria (66.67%)
6 5879 bp 39.85 3.01 90.37
scnpilot_cont_500_p_scaffold_13996
Genus: Legionella (83.33%)
6 6506 bp 37.81 2.58 83.00
scnpilot_cont_500_p_scaffold_7075
Class: Gammaproteobacteria (50%)
6 5606 bp 38.21 3.48 87.50
scnpilot_cont_500_p_scaffold_9395
Phylum: Proteobacteria (50%)
6 5866 bp 36.46 3.50 88.22
scnpilot_cont_500_p_scaffold_5396
Species: Legionella longbeachae (50%)
6 7142 bp 39.40 3.15 85.73
scnpilot_cont_500_p_scaffold_6700
Species: Legionella longbeachae (66.67%)
6 5873 bp 37.39 2.91 80.25
scnpilot_cont_500_p_scaffold_8066
Species: Legionella longbeachae (83.33%)
6 5047 bp 36.28 2.67 90.83
scnpilot_cont_500_p_scaffold_7084
Phylum: Proteobacteria (66.67%)
6 5599 bp 39.72 3.32 84.98
scnpilot_cont_500_p_scaffold_5149
Class: Gammaproteobacteria (66.67%)
6 7447 bp 36.99 3.02 85.24
scnpilot_cont_500_p_scaffold_6197
Genus: Legionella (66.67%)
6 6312 bp 40.11 2.99 85.27
scnpilot_cont_500_p_scaffold_5918 6 6591 bp 37.66 3.98 94.13
scnpilot_cont_500_p_scaffold_7343
Phylum: Proteobacteria (50%)
6 5438 bp 37.18 2.51 74.03
scnpilot_cont_500_p_scaffold_8073
Species: Legionella longbeachae (66.67%)
6 5528 bp 39.62 2.96 84.93
scnpilot_cont_500_p_scaffold_4186
Order: Legionellales (50%)
6 8897 bp 41.32 3.71 96.34
Displaying items 301-350 of 450 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.