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SCNPILOT_CONT_500_P_Legionella_38_3_partial

SCNPILOT_CONT_500_P_Gammaproteobacteria_38_3
In projects: SCNPILOT_CONT_500_P

Consensus taxonomy: Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Description

highly fragmented, from ESOM

Displaying items 351-400 of 450 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_cont_500_p_scaffold_4954 6 7692 bp 35.09 3.18 83.85
scnpilot_cont_500_p_scaffold_5411
Species: Legionella longbeachae (83.33%)
6 7116 bp 40.65 2.61 87.73
scnpilot_cont_500_p_scaffold_6460
Species: Legionella longbeachae (66.67%)
6 6083 bp 41.53 3.08 92.03
scnpilot_cont_500_p_scaffold_4961
Class: Gammaproteobacteria (66.67%)
6 7682 bp 40.86 3.69 93.41
scnpilot_cont_500_p_scaffold_4966 5 7673 bp 36.90 3.38 85.23
scnpilot_cont_500_p_scaffold_7363 5 5428 bp 35.48 3.32 68.48
scnpilot_cont_500_p_scaffold_6476
Species: Legionella longbeachae (80%)
5 6072 bp 42.57 3.09 89.87
scnpilot_cont_500_p_scaffold_6480 5 6070 bp 36.29 3.41 89.80
scnpilot_cont_500_p_scaffold_6739
Genus: Legionella (100%)
5 5839 bp 37.80 2.85 80.46
scnpilot_cont_500_p_scaffold_6234
Domain: Bacteria (80%)
5 6285 bp 36.40 2.98 91.17
scnpilot_cont_500_p_scaffold_6494 5 6059 bp 38.03 2.77 85.71
scnpilot_cont_500_p_scaffold_6756
Species: Acinetobacter sp. ANC 3862 (60%)
5 5828 bp 38.01 2.19 91.01
scnpilot_cont_500_p_scaffold_7901
Species: Legionella longbeachae (100%)
5 5140 bp 38.83 2.51 92.57
scnpilot_cont_500_p_scaffold_7144
Species: Legionella longbeachae (80%)
5 5563 bp 40.50 2.35 93.83
scnpilot_cont_500_p_scaffold_4251
Order: Legionellales (60%)
5 8803 bp 40.17 3.05 97.71
scnpilot_cont_500_p_scaffold_8139
Species: Legionella longbeachae (80%)
5 5010 bp 37.15 3.02 92.57
scnpilot_cont_500_p_scaffold_7413
Class: Gammaproteobacteria (60%)
5 5404 bp 36.29 3.80 89.60
scnpilot_cont_500_p_scaffold_6270
Species: Acinetobacter sp. ANC 3862 (80%)
5 6253 bp 37.98 2.69 86.41
scnpilot_cont_500_p_scaffold_6272
Genus: Legionella (60%)
5 6253 bp 38.32 3.09 87.89
scnpilot_cont_500_p_scaffold_4260
Genus: Legionella (100%)
5 8788 bp 38.26 2.88 85.38
scnpilot_cont_500_p_scaffold_5231 5 7342 bp 37.91 2.55 91.73
scnpilot_cont_500_p_scaffold_4521
Species: Legionella longbeachae (60%)
5 8360 bp 40.31 2.40 91.76
scnpilot_cont_500_p_scaffold_7686
Species: Legionella longbeachae (100%)
5 5243 bp 38.01 2.80 91.55
scnpilot_cont_500_p_scaffold_5752 5 6769 bp 39.89 3.32 87.89
scnpilot_cont_500_p_scaffold_6290
Domain: Bacteria (60%)
5 6241 bp 36.72 3.03 85.61
scnpilot_cont_500_p_scaffold_4532
Phylum: Proteobacteria (60%)
5 8345 bp 39.83 3.99 93.15
scnpilot_cont_500_p_scaffold_7452
Genus: Legionella (100%)
5 5380 bp 37.94 2.90 80.41
scnpilot_cont_500_p_scaffold_5777
Domain: Bacteria (80%)
5 6752 bp 36.67 4.22 85.71
scnpilot_cont_500_p_scaffold_7202
Species: Legionella longbeachae (100%)
5 5522 bp 40.11 3.23 95.78
scnpilot_cont_500_p_scaffold_7972
Genus: Legionella (80%)
5 5100 bp 40.31 3.44 91.00
scnpilot_cont_500_p_scaffold_7208
Genus: Legionella (80%)
5 5515 bp 39.98 2.83 92.20
scnpilot_cont_500_p_scaffold_6834
Phylum: Proteobacteria (60%)
5 5771 bp 36.30 3.27 90.04
scnpilot_cont_500_p_scaffold_5023
Phylum: Proteobacteria (60%)
5 7604 bp 36.84 3.43 86.68
scnpilot_cont_500_p_scaffold_6587 5 5976 bp 35.49 3.51 67.97
scnpilot_cont_500_p_scaffold_7987
Genus: Legionella (60%)
5 5093 bp 36.07 3.18 74.22
scnpilot_cont_500_p_scaffold_3102
Domain: Bacteria (60%)
5 11384 bp 37.21 3.07 88.91
scnpilot_cont_500_p_scaffold_7496
Species: Acinetobacter sp. CIP 64.2 (60%)
5 5354 bp 34.44 2.44 82.09
scnpilot_cont_500_p_scaffold_7506
Class: Gammaproteobacteria (100%)
5 5349 bp 37.75 3.56 83.85
scnpilot_cont_500_p_scaffold_7762
Class: Gammaproteobacteria (80%)
5 5207 bp 37.55 3.23 87.06
scnpilot_cont_500_p_scaffold_6881
Class: Gammaproteobacteria (60%)
5 5730 bp 37.61 3.74 90.47
scnpilot_cont_500_p_scaffold_6631
Class: Gammaproteobacteria (60%)
5 5941 bp 40.75 3.43 84.88
scnpilot_cont_500_p_scaffold_7013
Domain: Bacteria (60%)
5 5643 bp 35.19 3.62 74.43
scnpilot_cont_500_p_scaffold_7269
Genus: Legionella (100%)
5 5480 bp 36.90 2.63 95.64
scnpilot_cont_500_p_scaffold_5847
Class: Gammaproteobacteria (60%)
5 6673 bp 39.65 3.28 88.25
scnpilot_cont_500_p_scaffold_7537
Species: Legionella longbeachae (60%)
5 5324 bp 38.17 3.47 89.93
scnpilot_cont_500_p_scaffold_5102
Species: Legionella longbeachae (60%)
5 7505 bp 41.03 3.02 97.46
scnpilot_cont_500_p_scaffold_6918
Species: Legionella pneumophila (100%)
5 5707 bp 37.60 3.97 97.14
scnpilot_cont_500_p_scaffold_4903
Phylum: Proteobacteria (80%)
5 7767 bp 36.45 3.67 90.92
scnpilot_cont_500_p_scaffold_6413
Class: Gammaproteobacteria (60%)
5 6122 bp 39.32 3.72 96.19
scnpilot_cont_500_p_scaffold_6419
Phylum: Proteobacteria (60%)
5 6117 bp 42.42 3.38 100.39
Displaying items 351-400 of 450 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.