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scnpilot_cont_500_p_scaffold_5890

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_cont_500_p_scaffold_5890_1
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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48..572
DNA (525bp) protein (175aa)
DNA polymerase III subunits gamma and tau {ECO:0000313|EMBL:EIM73826.1}; EC=2.7.7.7 {ECO:0000313|EMBL:EIM73826.1};; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; P
dnaX; DNA polymerase III subunits gamma and tau (EC:2.7.7.7)
DNA polymerase III subunits gamma and tau n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BW74_9RHIZ
scnpilot_cont_500_p_scaffold_5890_2
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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569..895
DNA (327bp) protein (109aa)
Nucleoid-associated protein HMPREF0731_1634 n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RKM4_9PROT
Nucleoid-associated protein HMPREF0731_1634 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" so
hypothetical protein
scnpilot_cont_500_p_scaffold_5890_3
Oceanicaulis sp. HTCC2633, Oceanicaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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986..1687
DNA (702bp) protein (234aa)
Recombination protein RecR n=1 Tax=Oceanicaulis sp. HTCC2633 RepID=A3UFL2_9RHOB
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Ocea
recR; recombination protein RecR
scnpilot_cont_500_p_scaffold_5890_4
Alcanivorax hongdengensis, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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1711..2286
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Alcanivorax hongdengensis A-11-3 RepID=L0WG39_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EKF74790.1}; TaxID=1177179 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax hon
hypothetical protein
scnpilot_cont_500_p_scaffold_5890_5
unknown

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2502..2702
DNA (201bp) protein (67aa)

This feature has no annotations

scnpilot_cont_500_p_scaffold_5890_6
alpha proteobacterium Q-1, Alphaproteobacteria, Proteobacteria, Bacteria

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3262..4782
DNA (1521bp) protein (507aa)
RmuC family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WST8_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAK33639.1}; TaxID=1492281 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium Q-1.;"
rmuC; DNA recombination protein
scnpilot_cont_500_p_scaffold_5890_7
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4779..5297
DNA (519bp) protein (173aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS0
def; peptide deformylase Def (EC:3.5.1.88)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D54A31
scnpilot_cont_500_p_scaffold_5890_8
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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5311..6225
DNA (915bp) protein (305aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1458461 species="
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035EF39E
methionyl-tRNA formyltransferase
scnpilot_cont_500_p_scaffold_5890_9
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6225..6962
DNA (738bp) protein (246aa)
truA; tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridy
tRNA pseudouridine synthase A n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JBI5_HYPSM
scnpilot_cont_500_p_scaffold_5890_10
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6956..7768)
DNA (813bp) protein (271aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=1333998 species="Bacteria; Prot
Glutamate racemase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPQ4_PARL1
glutamate racemase
scnpilot_cont_500_p_scaffold_5890_11
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7765..8928)
DNA (1164bp) protein (388aa)
Succinyl-diaminopimelate desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690, ECO:0000256|SAAS:SAAS00082787}; Short=SDAP desuccinylase {ECO:0000256|HAMAP-Rule:MF_01690};; EC=3.5.1.18 {ECO:0000256|HAMAP-Rul
Succinyl-diaminopimelate desuccinylase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z8G9_AZOL4 rbh
dapE; Succinyl-diaminopimelate desuccinylase (SDAP)
scnpilot_cont_500_p_scaffold_5890_12
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8991..9254
DNA (264bp) protein (88aa)
2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RCA7_PHEZH
linX; 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase
linX; 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
Displaying 12 items

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