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scnpilot_cont_500_p_scaffold_1016

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_cont_500_p_scaffold_1016_1
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..408
DNA (408bp) protein (136aa)
DnaJ-class molecular chaperone CbpA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBX5_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB80706.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;
DnaJ-class molecular chaperone CbpA
scnpilot_cont_500_p_scaffold_1016_2
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(424..1584)
DNA (1161bp) protein (387aa)
magnesium transporter n=1 Tax=Xanthomonas arboricola RepID=UPI000318D9F1
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=317013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas a
Mg2+ transporter (mgtE)
scnpilot_cont_500_p_scaffold_1016_3
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1939..2868)
DNA (930bp) protein (310aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synth
YrdC/Sua5 family protein, required for threonylcarbamoyladenosine (T(6)A) formation in tRNA n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBX2_PELHB rbh
YrdC/Sua5 family protein, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA
scnpilot_cont_500_p_scaffold_1016_4
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2914..3837
DNA (924bp) protein (308aa)
Acetylspermidine deacetylase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBX1_PELHB rbh
Acetoin utilization protein {ECO:0000313|EMBL:KFL27120.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8
acetylspermidine deacetylase
scnpilot_cont_500_p_scaffold_1016_5
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3841..4086
DNA (246bp) protein (82aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclea
Exodeoxyribonuclease 7 small subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBX0_PELHB
exodeoxyribonuclease VII small subunit
scnpilot_cont_500_p_scaffold_1016_6
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4100..4699
DNA (600bp) protein (200aa)
Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBW9_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL30755.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
cytochrome oxidase biogenesis protein Sco1/SenC/PrrC copper metallochaperone
scnpilot_cont_500_p_scaffold_1016_7
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4703..5443
DNA (741bp) protein (247aa)
RNA binding methyltransferase FtsJ like protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBW8_PELHB
RNA binding methyltransferase FtsJ like {ECO:0000313|EMBL:CDP50092.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia
RNA binding methyltransferase FtsJ like protein
scnpilot_cont_500_p_scaffold_1016_8

Not on your lists

5540..6535
DNA (996bp) protein (332aa)
Putative voltage-gated potassium channel beta subunit protein n=1 Tax=uncultured bacterium 1062 RepID=B8R8W4_9BACT rbh
Putative voltage-gated potassium channel beta subunit protein {ECO:0000313|EMBL:ACF98120.1}; TaxID=548898 species="Bacteria; environmental samples.;" source="uncultured bacterium 1062.;"
voltage-gated potassium channel beta subunit protein
scnpilot_cont_500_p_scaffold_1016_9
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6646..7038)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8MZF9_CORCM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFE07132.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Cor
scnpilot_cont_500_p_scaffold_1016_10
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7038..8144)
DNA (1107bp) protein (369aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU0
Chorismate synthase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBW4_PELHB rbh
chorismate synthase
scnpilot_cont_500_p_scaffold_1016_11
Brevundimonas sp. EAKA, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8358..8765)
DNA (408bp) protein (136aa)
Addiction module antidote protein n=1 Tax=Octadecabacter arcticus 238 RepID=M9RVE3_9RHOB
Antitoxin {ECO:0000313|EMBL:KDP94370.1}; TaxID=1495854 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. EAKA.;"
addiction module antidote protein
scnpilot_cont_500_p_scaffold_1016_12
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8813..9442)
DNA (630bp) protein (210aa)
Phosphoglycerate mutase family (Rhiz) n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBW2_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB10196.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
phosphoglycerate mutase family (Rhiz)
scnpilot_cont_500_p_scaffold_1016_13
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9450..10265)
DNA (816bp) protein (272aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobi
Enoyl-[acyl-carrier-protein] reductase [NADH] n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBW1_PELHB rbh
enoyl-ACP reductase
scnpilot_cont_500_p_scaffold_1016_14
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10307..11725
DNA (1419bp) protein (473aa)
D-2-hydroxyglutarate dehydrogenase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBW0_PELHB rbh
2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:KFL27126.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8
D-2-hydroxyacid dehydrogenase
scnpilot_cont_500_p_scaffold_1016_15
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11884..12618)
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBV5_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB08853.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
scnpilot_cont_500_p_scaffold_1016_16
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12683..13072
DNA (390bp) protein (130aa)
UPI0003CFFEF2 related cluster n=1 Tax=unknown RepID=UPI0003CFFEF2
Uncharacterized protein {ECO:0000313|EMBL:KKC32947.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
NUDIX hydrolase
scnpilot_cont_500_p_scaffold_1016_17
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13115..13483
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBV3_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KFL27127.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
scnpilot_cont_500_p_scaffold_1016_18
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13574..13852
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBV2_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB82648.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;
hypothetical protein
scnpilot_cont_500_p_scaffold_1016_19
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13908..14687
DNA (780bp) protein (260aa)
Folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBT8_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKC41492.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudi
folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress
scnpilot_cont_500_p_scaffold_1016_20
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14715..15335
DNA (621bp) protein (207aa)
Putative hydrolases of HD superfamily n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBT7_PELHB rbh
Hydrolase {ECO:0000313|EMBL:KKB82645.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
putative hydrolases of HD superfamily
scnpilot_cont_500_p_scaffold_1016_21
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15427..15927
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBT6_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB08845.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
hypothetical protein
scnpilot_cont_500_p_scaffold_1016_22
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15928..16953)
DNA (1026bp) protein (342aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBT5_PELHB
Cell wall hydrolyses involved in spore germination {ECO:0000313|EMBL:CDP50105.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" sourc
hypothetical protein
scnpilot_cont_500_p_scaffold_1016_23
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17102..19342)
DNA (2241bp) protein (747aa)
Pyruvate,phosphate dikinase n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBT4_PELHB rbh
Pyruvate,phosphate dikinase {ECO:0000313|EMBL:KFC69566.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
pyruvate,phosphate dikinase
scnpilot_cont_500_p_scaffold_1016_24
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19444..20484
DNA (1041bp) protein (347aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxI
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IZ80_POLGS rbh
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
scnpilot_cont_500_p_scaffold_1016_25
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20481..20999
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00035F2105
Acetyltransferase, GNAT family {ECO:0000313|EMBL:KFC69568.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;
hypothetical protein
scnpilot_cont_500_p_scaffold_1016_26
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20996..21466
DNA (471bp) protein (157aa)
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00
rnhA; ribonuclease H (EC:3.1.26.4)
RNaseH ribonuclease n=1 Tax=Kaistia granuli RepID=UPI00037A07A2
scnpilot_cont_500_p_scaffold_1016_27
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21603..21923
DNA (321bp) protein (107aa)
Uncharacterized protein {ECO:0000313|EMBL:KFC69571.1}; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
scnpilot_cont_500_p_scaffold_1016_28
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21994..24021)
DNA (2028bp) protein (676aa)
Glycine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039777}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039811};; Glycyl-tRNA synthetas
Glycine--tRNA ligase beta subunit n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RBT0_PELHB rbh
glycyl-tRNA synthetase subunit beta
scnpilot_cont_500_p_scaffold_1016_29
Lyngbya confervoides, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(24091..24471)
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Methylobacterium sp. WSM2598 RepID=UPI00036F4B94
Uncharacterized protein {ECO:0000313|EMBL:KIF43761.1}; TaxID=1574623 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya confervoides BDU141951.;"
PilT-like protein protein
scnpilot_cont_500_p_scaffold_1016_30
Peptococcaceae bacterium SCADC1_2_3, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24473..24979)
DNA (507bp) protein (169aa)
Uncharacterized protein n=3 Tax=Gluconobacter oxydans RepID=K7SIY0_GLUOY
AbrB family transcriptional regulator {ECO:0000313|EMBL:KFD40742.1}; TaxID=1487582 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae.;" source="Peptococcaceae bacterium SCADC1_2
hypothetical protein
Displaying items 1-30 of 31 in total

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