ggKbase home page

scnpilot_cont_500_p_scaffold_388

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_cont_500_p_scaffold_388_1
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..447
DNA (447bp) protein (149aa)
Putative ABC-type Fe3+ transport system, permease component n=1 Tax=Vibrio nigripulchritudo RepID=U4KIX8_9VIBR
Uncharacterized protein {ECO:0000313|EMBL:KKB86389.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;
putative ABC-type Fe3+ transport system, permease component
scnpilot_cont_500_p_scaffold_388_2
unknown

Not on your lists

comp(574..879)
DNA (306bp) protein (102aa)

This feature has no annotations

scnpilot_cont_500_p_scaffold_388_3
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1095..2021
DNA (927bp) protein (309aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037BD8AB rbh
Ribokinase {ECO:0000313|EMBL:KJC57071.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
ribokinase
scnpilot_cont_500_p_scaffold_388_4
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2235..2663
DNA (429bp) protein (143aa)
Putative outer membrane protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QV19_9RHIZ
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB86654.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosi
Bacterial extracellular solute-binding protein
scnpilot_cont_500_p_scaffold_388_5
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2664..3383
DNA (720bp) protein (240aa)
ABC transporter substrate binding protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K1G0_AGRVS rbh
ABC transporter substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KKB86654.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosi
scnpilot_cont_500_p_scaffold_388_6
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3380..4261
DNA (882bp) protein (294aa)
spermidine/putrescine ABC transporter permease n=1 Tax=Rhizobium mongolense RepID=UPI0003B39AA2 rbh
Spermidine/putrescine ABC transporter permease {ECO:0000313|EMBL:KKB86668.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="D
ABC transporter permease protein
scnpilot_cont_500_p_scaffold_388_7
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4261..5091
DNA (831bp) protein (277aa)
ABC transporter permease n=1 Tax=Rhizobium radiobacter RepID=UPI000365AC0E rbh
ABC transporter permease {ECO:0000313|EMBL:KKB81128.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
ABC-type spermidine/putrescine transport system, permease component II
scnpilot_cont_500_p_scaffold_388_8
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5122..6171
DNA (1050bp) protein (350aa)
ABC transporter, nucleotide binding/ATPase protein n=1 Tax=Rhizobium sp. IRBG74 RepID=U4Q689_9RHIZ rbh
ABC transporter {ECO:0000313|EMBL:KFL32216.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
ABC transporter, nucleotide binding/ATPase protein
scnpilot_cont_500_p_scaffold_388_9
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6168..7016
DNA (849bp) protein (283aa)
Glycerophosphoryl diester phosphodiesterase n=1 Tax=Rhizobium sp. IRBG74 RepID=U4QGW6_9RHIZ rbh
Glycerophosphodiester phosphodiesterase {ECO:0000313|EMBL:KKB86657.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia
Glycerophosphoryl diester phosphodiesterase
scnpilot_cont_500_p_scaffold_388_10
Devosia insulae, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7009..7836
DNA (828bp) protein (276aa)
inositol monophosphatase n=1 Tax=Rhizobium radiobacter RepID=UPI0003677128 rbh
Extragenic suppressor protein SuhB {ECO:0000313|EMBL:KKB83105.1}; TaxID=1116389 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia insul
Extragenic suppressor protein SuhB
scnpilot_cont_500_p_scaffold_388_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7838..8737
DNA (900bp) protein (300aa)
Rhizopine catabolism protein MocC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTX2_9RHIZ
Rhizopine catabolism protein MocC {ECO:0000313|EMBL:EYR81587.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.
rhizopine catabolism protein MocC
scnpilot_cont_500_p_scaffold_388_12
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8787..10139)
DNA (1353bp) protein (451aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00035DE7C3 rbh
Cytochrome P450 {ECO:0000313|EMBL:KHJ53433.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
cytochrome P450
scnpilot_cont_500_p_scaffold_388_13
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10164..10517)
DNA (354bp) protein (118aa)
Transcriptional regulator, LuxR family n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YH06_MESOW
Respose regulatory protein {ECO:0000313|EMBL:CDX12680.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium pl
LuxR family transcriptional regulator
scnpilot_cont_500_p_scaffold_388_14
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10471..11319)
DNA (849bp) protein (283aa)
PDZ/DHR/GLGF domain-containing protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y3S7_9RHIZ
PDZ/DHR/GLGF protein
PDZ/DHR/GLGF domain-containing protein {ECO:0000313|EMBL:EHH13595.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Me
scnpilot_cont_500_p_scaffold_388_15
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11399..12913)
DNA (1515bp) protein (505aa)
UPI0003D022EE related cluster n=1 Tax=unknown RepID=UPI0003D022EE rbh
MFS transporter {ECO:0000313|EMBL:KFL24889.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
EmrB/QacA subfamily drug resistance transporter
scnpilot_cont_500_p_scaffold_388_16
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12926..13669)
DNA (744bp) protein (248aa)
L-proline glycine betaine ABC transport system permease protein ProW n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R7I7_PELHB rbh
ABC transporter {ECO:0000313|EMBL:KKB86551.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
L-proline glycine betaine ABC transport system permease protein ProW
scnpilot_cont_500_p_scaffold_388_17
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13666..14604)
DNA (939bp) protein (313aa)
ABC-type proline/glycine betaine transport system, ATPase component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YMR6_9RHIZ
Amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFL31511.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Dev
ABC transporter-like protein
scnpilot_cont_500_p_scaffold_388_18
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14601..15806)
DNA (1206bp) protein (402aa)
ABC transporter, permease protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q983A6_RHILO
ABC transporter permease {ECO:0000313|EMBL:KKB08443.1}; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
ABC transporter permease
scnpilot_cont_500_p_scaffold_388_19
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15835..16746)
DNA (912bp) protein (304aa)
UPI0003D02890 related cluster n=1 Tax=unknown RepID=UPI0003D02890
Uncharacterized protein {ECO:0000313|EMBL:KFL31509.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
glycine betaine ABC transporter substrate-binding protein
scnpilot_cont_500_p_scaffold_388_20
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17067..17990)
DNA (924bp) protein (308aa)
AraC family transcriptional regulator (EC:2.1.1.63)
Regulator of melibiose operon n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CK10_9RHOB
Melibiose operon regulatory protein {ECO:0000313|EMBL:CDP53163.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp.
scnpilot_cont_500_p_scaffold_388_21
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18095..19468
DNA (1374bp) protein (458aa)
Alpha-galactosidase {ECO:0000313|EMBL:CDP53168.1}; EC=3.2.1.22 {ECO:0000313|EMBL:CDP53168.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Dev
melA-2; alpha-galactosidase 2 (EC:3.2.1.22)
Family 4 glycosyl hydrolase, alpha-galactosidase/6-phospho-beta-glucosidase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0WGZ7_RHILT
scnpilot_cont_500_p_scaffold_388_22
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19550..20488
DNA (939bp) protein (313aa)
L-arabinose 1-dehydrogenase {ECO:0000313|EMBL:CDP51725.1}; EC=1.1.1.46 {ECO:0000313|EMBL:CDP51725.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiac
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000363CAA3 rbh
L-arabinose 1-dehydrogenase
scnpilot_cont_500_p_scaffold_388_23
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20613..21311)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DDE8_BRAJP
ABC transporter
Uncharacterized protein {ECO:0000313|EMBL:BAL05535.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium ja
scnpilot_cont_500_p_scaffold_388_24
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21308..23173)
DNA (1866bp) protein (622aa)
branched-chain amino acid ABC transporter ATPase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036592BC
Bradyrhizobium elkanii strain UASWS1015 Contig172, whole genome shotgun sequence {ECO:0000313|EMBL:KIU49807.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrh
branched-chain amino acid ABC transporter ATPase
scnpilot_cont_500_p_scaffold_388_25
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23187..24062)
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NRY0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS31866.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC
livH3; ABC transporter, putative high-affinity branched-chain amino acid transport permease LivH
scnpilot_cont_500_p_scaffold_388_26
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24122..25462)
DNA (1341bp) protein (447aa)
Twin-arginine translocation pathway signal n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3J7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CDX39856.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium pluri
twin-arginine translocation pathway signal
scnpilot_cont_500_p_scaffold_388_27
unknown

Not on your lists

comp(25655..25963)
DNA (309bp) protein (103aa)

This feature has no annotations

scnpilot_cont_500_p_scaffold_388_28
Magnetospirillum magneticum, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25963..26724)
DNA (762bp) protein (254aa)
Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=Q2W278_MAGSA
response regulator
Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:BAE52047.1}; TaxID=342108 species="Bacteria; Proteobacteria; Alphaproteobacteria; R
scnpilot_cont_500_p_scaffold_388_29
Candidatus Competibacter denitrificans, Candidatus Competibacter, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26906..27232
DNA (327bp) protein (109aa)
Response regulator receiver protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y7R4_LEPCP
Alkaline phosphatase synthesis transcriptional regulatory protein {ECO:0000313|EMBL:CDI01475.1}; TaxID=1400863 species="Bacteria; Proteobacteria; Gammaproteobacteria; Competibacteraceae; Candidatus Co
response regulator receiver protein
scnpilot_cont_500_p_scaffold_388_30
unknown

Not on your lists

27236..27460
DNA (225bp) protein (75aa)

This feature has no annotations

Displaying items 1-30 of 38 in total

View Taxonomy