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scnpilot_cont_500_p_scaffold_189_curated

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Displaying items 1-30 of 60 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_cont_500_p_scaffold_189_curated_1
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..796
DNA (795bp) protein (265aa)
Phenylacetate-coenzyme A ligase {ECO:0000256|PIRNR:PIRNR006444}; EC=6.2.1.30 {ECO:0000256|PIRNR:PIRNR006444};; Phenylacetyl-CoA ligase {ECO:0000256|PIRNR:PIRNR006444}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
phenylacetate-CoA ligase (EC:6.2.1.30); K01912 phenylacetate-CoA ligase [EC:6.2.1.30]
Phenylacetate-CoA ligase n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6ANS4_DELSC
scnpilot_cont_500_p_scaffold_189_curated_2
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

842..1864
DNA (1023bp) protein (341aa)
paaA; phenylacetate-CoA oxygenase subunit PaaA; K02609 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA [EC:1.14.13.149]
Phenylacetate-CoA oxygenase, PaaG subunit n=4 Tax=Delftia RepID=A9BS46_DELAS
Phenylacetate-CoA oxygenase, PaaG subunit {ECO:0000313|EMBL:EZP44978.1}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
scnpilot_cont_500_p_scaffold_189_curated_3
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1861..2166
DNA (306bp) protein (102aa)
Phenylacetate-CoA oxygenase, PaaH subunit n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WA01_DELAC
Phenylacetic acid degradation B {ECO:0000313|EMBL:KFJ11712.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
phenylacetate-CoA oxygenase subunit PaaH; K02610 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB
scnpilot_cont_500_p_scaffold_189_curated_4
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2180..2962
DNA (783bp) protein (261aa)
phenylacetate-CoA oxygenase subunit PaaI; K02611 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC [EC:1.14.13.149]
Phenylacetate-CoA oxygenase, PaaI subunit n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WUP2_DELAC
Phenylacetate-CoA oxygenase, PaaI subunit {ECO:0000313|EMBL:EPD36522.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
scnpilot_cont_500_p_scaffold_189_curated_5
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2962..3531
DNA (570bp) protein (190aa)
Phenylacetate-CoA oxygenase, PaaJ subunit n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WB90_DELAC
Phenylacetate-CoA oxygenase, PaaJ subunit {ECO:0000313|EMBL:EPD36521.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
phenylacetate-CoA oxygenase subunit PaaJ; K02612 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD
scnpilot_cont_500_p_scaffold_189_curated_6
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3528..4625
DNA (1098bp) protein (366aa)
phenylacetate-CoA oxygenase/reductase subunit PaaK (EC:1.14.12.17); K02613 ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE
Phenylacetate-CoA oxygenase/reductase, PaaK subunit n=2 Tax=Delftia acidovorans RepID=S2WEA6_DELAC
Phenylacetate-CoA oxygenase/reductase, PaaK subunit {ECO:0000313|EMBL:EPD36520.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
scnpilot_cont_500_p_scaffold_189_curated_7
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4659..5351)
DNA (693bp) protein (231aa)
Uncharacterized protein n=3 Tax=Bacteria RepID=S2W992_DELAC
Uncharacterized protein {ECO:0000313|EMBL:KFJ11287.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
hypothetical protein
scnpilot_cont_500_p_scaffold_189_curated_8
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5354..5839)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2X8H1_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD36209.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
hypothetical protein
scnpilot_cont_500_p_scaffold_189_curated_9
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6059..7582)
DNA (1524bp) protein (508aa)
Sulphate transporter n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AMX8_DELSC
sulfate transporter
Sulphate transporter {ECO:0000313|EMBL:AEF92687.1}; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
scnpilot_cont_500_p_scaffold_189_curated_10
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7840..8337)
DNA (498bp) protein (166aa)
Uncharacterized protein n=2 Tax=Delftia acidovorans RepID=S2WAJ9_DELAC
Uncharacterized protein {ECO:0000313|EMBL:KEH12634.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
hypothetical protein
scnpilot_cont_500_p_scaffold_189_curated_11
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8424..8990)
DNA (567bp) protein (189aa)
Single-stranded DNA-binding protein n=2 Tax=Delftia acidovorans RepID=S2WEA0_DELAC
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
ssDNA-binding protein; K03111 single-strand DNA-binding protein
scnpilot_cont_500_p_scaffold_189_curated_12
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9150..10439)
DNA (1290bp) protein (430aa)
Uncharacterized protein n=2 Tax=Delftia acidovorans RepID=S2W995_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD36213.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
major facilitator superfamily protein
scnpilot_cont_500_p_scaffold_189_curated_13
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10599..13706
DNA (3108bp) protein (1036aa)
UvrABC system protein A n=2 Tax=Delftia acidovorans RepID=S2W9Z3_DELAC
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
excinuclease ABC subunit A; K03701 excinuclease ABC subunit A
scnpilot_cont_500_p_scaffold_189_curated_14
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13715..14869
DNA (1155bp) protein (385aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WDG4_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD36215.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
FAD dependent oxidoreductase
scnpilot_cont_500_p_scaffold_189_curated_15
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14891..15868)
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WB79_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD36511.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
succinylglutamate desuccinylase/aspartoacylase
scnpilot_cont_500_p_scaffold_189_curated_16
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15876..16859)
DNA (984bp) protein (328aa)
Uncharacterized protein n=2 Tax=Delftia acidovorans RepID=S2WE96_DELAC
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEH08841.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
hypothetical protein
scnpilot_cont_500_p_scaffold_189_curated_17
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17015..17920)
DNA (906bp) protein (302aa)
LysR family transcriptional regulator n=1 Tax=Chryseobacterium taeanense RepID=UPI0003158244
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EZP47310.1}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
scnpilot_cont_500_p_scaffold_189_curated_18
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17941..18768)
DNA (828bp) protein (276aa)
Orotidine 5'-phosphate decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032256}; EC=4.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01215, ECO:0000256|SAAS:SAAS00032220};; OMP decarboxylase {ECO:0000256|HAMAP-Rule:MF_01215}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
orotidine 5'-phosphate decarboxylase (EC:4.1.1.23); K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23]
Orotidine 5'-phosphate decarboxylase n=2 Tax=Delftia acidovorans RepID=S2W9Y9_DELAC
scnpilot_cont_500_p_scaffold_189_curated_19
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18857..19738
DNA (882bp) protein (294aa)
Uncharacterized protein n=2 Tax=Delftia acidovorans RepID=S2WDG9_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD36220.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
hypothetical protein
scnpilot_cont_500_p_scaffold_189_curated_20
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19813..20412)
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Chryseobacterium taeanense RepID=UPI0002DECF2E
Uncharacterized protein {ECO:0000313|EMBL:KEH08838.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
hypothetical protein
scnpilot_cont_500_p_scaffold_189_curated_21
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20409..20948)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WU12_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD36222.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
hypothetical protein
scnpilot_cont_500_p_scaffold_189_curated_22
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21069..22295)
DNA (1227bp) protein (409aa)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
phosphoglycerate kinase (EC:2.7.2.3); K00927 phosphoglycerate kinase [EC:2.7.2.3]
Phosphoglycerate kinase n=2 Tax=Delftia acidovorans RepID=S2W9A1_DELAC
scnpilot_cont_500_p_scaffold_189_curated_23
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22456..22791)
DNA (336bp) protein (112aa)
Branched-chain amino acid transport n=4 Tax=Delftia RepID=A9BS65_DELAS
branched-chain amino acid transport
Branched-chain amino acid transport family protein {ECO:0000313|EMBL:KFJ10304.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
scnpilot_cont_500_p_scaffold_189_curated_24
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22791..23654)
DNA (864bp) protein (288aa)
branched-chain amino acid ABC transporter permease n=1 Tax=Chryseobacterium taeanense RepID=UPI000309243A
AzlC family protein
Uncharacterized protein {ECO:0000313|EMBL:EPD36225.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
scnpilot_cont_500_p_scaffold_189_curated_25
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23651..24634)
DNA (984bp) protein (328aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9]
Methionyl-tRNA formyltransferase n=2 Tax=Delftia acidovorans RepID=S2WAK7_DELAC
scnpilot_cont_500_p_scaffold_189_curated_26
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24671..25204)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WU14_DELAC
Membrane protein {ECO:0000313|EMBL:KEH08832.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
putative lipoprotein transmembrane
scnpilot_cont_500_p_scaffold_189_curated_27
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25201..25713)
DNA (513bp) protein (171aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
peptide deformylase (EC:3.5.1.88); K01462 peptide deformylase [EC:3.5.1.88]
Peptide deformylase n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2W9A4_DELAC
scnpilot_cont_500_p_scaffold_189_curated_28
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25913..27118
DNA (1206bp) protein (402aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2X8I7_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD36229.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
peptidoglycan-binding LysM
scnpilot_cont_500_p_scaffold_189_curated_29
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27144..28349
DNA (1206bp) protein (402aa)
DNA protecting protein DprA n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WUM1_DELAC
DNA processing protein DprA {ECO:0000313|EMBL:KEH08829.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
DNA protecting protein DprA; K04096 DNA processing protein
scnpilot_cont_500_p_scaffold_189_curated_30
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28491..30914)
DNA (2424bp) protein (808aa)
hypothetical protein n=1 Tax=Chryseobacterium taeanense RepID=UPI0003623487
Uncharacterized protein {ECO:0000313|EMBL:EPD36231.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
hypothetical protein
Displaying items 1-30 of 60 in total

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