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SCNpilot_cont_750_bf_scaffold_1020

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_1020_1
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1062)
DNA (1062bp) protein (354aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00035C7A4D
Putative rhodocoxin reductase {ECO:0000313|EMBL:KCB45898.1}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
ferredoxin--NAD+ reductase
SCNpilot_cont_750_bf_scaffold_1020_2
Elstera litoralis, Elstera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1114..2322)
DNA (1209bp) protein (403aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002E54352
ABC transporter permease {ECO:0000313|EMBL:KJV09198.1}; TaxID=552518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Elstera.;" source="Elstera litoralis.;"
putative ABC branched-chain amino transporter, periplasmic binding protein
SCNpilot_cont_750_bf_scaffold_1020_3
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2398..3606)
DNA (1209bp) protein (403aa)
Fe-S oxidoreductase-like protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V8K0_9BRAD
Fe-S oxidoreductase-like protein {ECO:0000313|EMBL:EFI50885.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein rbh
SCNpilot_cont_750_bf_scaffold_1020_4
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3826..4653
DNA (828bp) protein (276aa)
LysR family transcriptional regulator n=2 Tax=Pandoraea RepID=V5UB72_9BURK
LysR family transcriptional regulator {ECO:0000313|EMBL:AIU26288.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
transcriptional regulator
SCNpilot_cont_750_bf_scaffold_1020_5
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4802..5674)
DNA (873bp) protein (291aa)
Fec I like protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8B0C5_AZOBR rbh
RNA polymerase sigma factor SigJ {ECO:0000313|EMBL:AIB12481.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
fec I like protein rbh
SCNpilot_cont_750_bf_scaffold_1020_6
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5700..6038)
DNA (339bp) protein (113aa)
Antibiotic biosynthesis monooxygenase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8B0C4_AZOBR
antibiotic biosynthesis monooxygenase
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:CCD03633.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
SCNpilot_cont_750_bf_scaffold_1020_7
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6381..7436)
DNA (1056bp) protein (352aa)
arsenic transporter n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F73C
Arsenical-resistance protein {ECO:0000313|EMBL:CDN94495.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
arsenite efflux pump ACR3; K03325 arsenite transporter, ACR3 family
SCNpilot_cont_750_bf_scaffold_1020_8
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7445..7870)
DNA (426bp) protein (142aa)
Arsenate reductase {ECO:0000256|RuleBase:RU362029}; EC=1.20.4.1 {ECO:0000256|RuleBase:RU362029};; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
arsenate reductase; K00537 arsenate reductase [EC:1.20.4.1]
arsenate reductase n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F73B
SCNpilot_cont_750_bf_scaffold_1020_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7879..8418)
DNA (540bp) protein (180aa)
Low molecular weight phosphotyrosine protein phosphatase; K03741 arsenate reductase [EC:1.20.4.1]
ArsR family transcriptional regulator n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F73A
Uncharacterized protein {ECO:0000313|EMBL:CDN94493.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_cont_750_bf_scaffold_1020_10
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8411..8773)
DNA (363bp) protein (121aa)
Transcriptional regulatory protein, ArsR family protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X0G9_9BRAD
Transcriptional regulatory protein, ArsR family protein {ECO:0000313|EMBL:EAQ34272.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
transcriptional regulatory protein of ArsR family
SCNpilot_cont_750_bf_scaffold_1020_11
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8985..9587)
DNA (603bp) protein (201aa)
GCN5-related N-acetyltransferase n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P136_9RHOB rbh
N-acetyltransferase GCN5 {ECO:0000313|EMBL:KJB93190.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
GCN5-like N-acetyltransferase rbh
SCNpilot_cont_750_bf_scaffold_1020_12
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9611..11134)
DNA (1524bp) protein (508aa)
Major facilitator superfamily MFS_1 n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JTR2_HYPDA rbh
MFS transporter {ECO:0000313|EMBL:KJB93191.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
major facilitator superfamily protein; K08167 MFS transporter, DHA2 family, methyl viologen resistance protein SmvA rbh
SCNpilot_cont_750_bf_scaffold_1020_13
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11212..11754
DNA (543bp) protein (181aa)
Transcriptional regulator, TetR family n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JTR1_HYPDA
TetR family transcriptional regulator {ECO:0000313|EMBL:KJB93192.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
TetR family transcriptional regulator
SCNpilot_cont_750_bf_scaffold_1020_14
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12133..12393
DNA (261bp) protein (87aa)
fdhA3; formate dehydrogenase subunit alpha FdhA (EC:1.2.1.2); K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2]
Molybdopterin oxidoreductase n=1 Tax=Afipia sp. 1NLS2 RepID=D6VA05_9BRAD
Putative formate dehydrogenase {ECO:0000313|EMBL:CEG07761.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_cont_750_bf_scaffold_1020_15
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12418..14121
DNA (1704bp) protein (568aa)
alpha subunit of formate dehydrogenase (EC:1.2.1.2); K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2]
Molybdopterin oxidoreductase n=1 Tax=Afipia sp. 1NLS2 RepID=D6VA06_9BRAD
Molybdopterin oxidoreductase {ECO:0000313|EMBL:EFI50300.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
SCNpilot_cont_750_bf_scaffold_1020_16
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14134..15990
DNA (1857bp) protein (619aa)
nuoF3; NADH-quinone oxidoreductase subunit F (EC:1.6.99.5); K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit F {ECO:0000313|EMBL:AEI07380.1}; EC=1.6.99.5 {ECO:0000313|EMBL:AEI07380.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
NADH dehydrogenase i chain f n=2 Tax=Oligotropha carboxidovorans RepID=B6JB78_OLICO
SCNpilot_cont_750_bf_scaffold_1020_17
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15987..16946
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NMK0_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29654.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
NADH-quinone oxidoreductase family protein
SCNpilot_cont_750_bf_scaffold_1020_18
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17113..18912)
DNA (1800bp) protein (600aa)
Selenocysteine-specific elongation factor SelB n=2 Tax=Oligotropha carboxidovorans RepID=B6JB76_OLICO
selB; selenocysteine-specific translation elongation factor; K03833 selenocysteine-specific elongation factor
Selenocysteine-specific elongation factor SelB {ECO:0000313|EMBL:AEI07382.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_750_bf_scaffold_1020_19
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19383..20036
DNA (654bp) protein (218aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JHZ2_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI07160.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_750_bf_scaffold_1020_20
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19991..20347
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000366BA68
Transcriptional regulator {ECO:0000313|EMBL:EIG57830.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
LysR family transcriptional regulator
SCNpilot_cont_750_bf_scaffold_1020_21
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20381..20923)
DNA (543bp) protein (181aa)
Protein-tyrosine phosphatase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GRN4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CDP53186.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1020_22
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20939..21148)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QLK3_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62894.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_1020_23
Brucella pinnipedialis, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21319..22602
DNA (1284bp) protein (428aa)
aminotransferase (EC:2.6.1.18) rbh
Aminotransferase n=6 Tax=Brucella RepID=C9U1J2_BRUPB rbh
Aminotransferase {ECO:0000313|EMBL:EEZ29065.1}; TaxID=520462 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella pinnipedialis M292/94/1.;"
SCNpilot_cont_750_bf_scaffold_1020_24
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22865..24250)
DNA (1386bp) protein (462aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003753A68 rbh
Uncharacterized protein {ECO:0000313|EMBL:BAR58430.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
putative FAD/FMN-containing dehydrogenase
SCNpilot_cont_750_bf_scaffold_1020_25
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24680..25222
DNA (543bp) protein (181aa)
LysR family transcriptional regulator n=1 Tax=Rhizobium loti RepID=UPI0003655F16
Transcriptional regulator {ECO:0000313|EMBL:CDX16315.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
LysR family transcriptional regulator
SCNpilot_cont_750_bf_scaffold_1020_26
unknown

Not on your lists

comp(25732..25821)
DNA (90bp) protein (30aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1020_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27120..27410)
DNA (291bp) protein (97aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQF5_9RHIZ
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1020_28
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27414..28448)
DNA (1035bp) protein (345aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SR95_NITWN rbh
hypothetical protein; K15342 CRISP-associated protein Cas1 rbh
SCNpilot_cont_750_bf_scaffold_1020_29
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28445..29113)
DNA (669bp) protein (223aa)
CRISPR-associated protein Cas4 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CKZ8_9RHIZ rbh
CRISPR-associated protein Cas4 {ECO:0000313|EMBL:EYR78098.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K07464 putative RecB family exonuclease rbh
SCNpilot_cont_750_bf_scaffold_1020_30
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29118..30071)
DNA (954bp) protein (318aa)
CRISPR-associated protein, Csd2 family n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SR93_NITWN rbh
CRISPR-associated Csh2 family protein rbh
CRISPR-associated protein, Csd2 family {ECO:0000313|EMBL:ABA05198.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Displaying items 1-30 of 40 in total

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