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SCNpilot_cont_750_bf_scaffold_1029

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_1029_1
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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3..1820
DNA (1818bp) protein (606aa)
TRAG family protein n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0ACY8_NITEC rbh
Conjugal transfer protein TrbG {ECO:0000313|EMBL:KIO48703.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4 rbh
SCNpilot_cont_750_bf_scaffold_1029_2
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1817..2338
DNA (522bp) protein (174aa)
Type IV secretory pathway protease TraF-like protein n=1 Tax=Klebsiella pneumoniae subsp. pneumoniae KPNIH18 RepID=J2AG31_KLEPN
Conjugal transfer protein TraF {ECO:0000313|EMBL:KIO48704.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
Type IV secretory pathway protease TraF-like
SCNpilot_cont_750_bf_scaffold_1029_3
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2340..2804
DNA (465bp) protein (155aa)
Lytic transglycosylase, catalytic n=1 Tax=Ralstonia solanacearum SD54 RepID=V5CHJ8_RALSL
Lytic transglycosylase, catalytic {ECO:0000313|EMBL:EPL59896.1}; TaxID=1212549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri B1SMN1.;"
lytic transglycosylase, catalytic; K03194 type IV secretion system protein VirB1
SCNpilot_cont_750_bf_scaffold_1029_4
Xenorhabdus bovienii, Xenorhabdus, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2831..4063)
DNA (1233bp) protein (411aa)
Conjugal transfer protein TrbI n=2 Tax=Proteobacteria RepID=V5CHL3_RALSL rbh
Conjugation TrbI family protein {ECO:0000313|EMBL:CDH02258.1}; TaxID=1398200 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Xenorhabdus.;" source="Xenorhabdus bovienii str. feltiae Moldova.;"
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
SCNpilot_cont_750_bf_scaffold_1029_5
unknown

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comp(4060..4518)
DNA (459bp) protein (153aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1029_6
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4515..5435)
DNA (921bp) protein (307aa)
Conjugal transfer protein TrbG n=1 Tax=Klebsiella pneumoniae subsp. pneumoniae KPNIH18 RepID=J1ZWW9_KLEPN
Conjugal transfer protein TrbG {ECO:0000313|EMBL:KIO48705.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
P-type conjugative transfer protein TrbG; K03204 type IV secretion system protein VirB9
SCNpilot_cont_750_bf_scaffold_1029_7
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5452..6105)
DNA (654bp) protein (218aa)
conjugal transfer protein n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI0002376FBC
Conjugal transfer protein {ECO:0000313|EMBL:KIO48643.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
conjugal transfer protein; K03200 type IV secretion system protein VirB5
SCNpilot_cont_750_bf_scaffold_1029_8
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6092..7597)
DNA (1506bp) protein (502aa)
TrbL protein n=1 Tax=Ralstonia solanacearum SD54 RepID=V5CHL8_RALSL rbh
Uncharacterized protein {ECO:0000313|EMBL:KIO48644.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
P-type conjugative transfer protein TrbL rbh
SCNpilot_cont_750_bf_scaffold_1029_9
unknown

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comp(7599..7814)
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1029_10
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7814..8539)
DNA (726bp) protein (242aa)
P-type conjugative transfer protein TrbJ n=1 Tax=Brucella suis F7/06-5 RepID=N8JXE9_BRUSS
Uncharacterized protein {ECO:0000313|EMBL:KIO48646.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
TrbJ protein
SCNpilot_cont_750_bf_scaffold_1029_11
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8520..11015)
DNA (2496bp) protein (832aa)
CagE, TrbE, VirB component of type IV transporter system n=1 Tax=Klebsiella pneumoniae subsp. pneumoniae KPNIH18 RepID=J1ZX06_KLEPN rbh
Transporter {ECO:0000313|EMBL:KIO48647.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
CagE, TrbE, VirB component of type IV transporter system; K03199 type IV secretion system protein VirB4 rbh
SCNpilot_cont_750_bf_scaffold_1029_12
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11015..11320)
DNA (306bp) protein (102aa)
Putative conjugal transfer protein TrbD n=1 Tax=uncultured bacterium RepID=U3LPE8_9BACT
Conjugal transfer protein TrbD {ECO:0000313|EMBL:KIO48648.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
conjugal transfer protein TrbD; K03198 type IV secretion system protein VirB3
SCNpilot_cont_750_bf_scaffold_1029_13
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11328..11672)
DNA (345bp) protein (115aa)
Putative mating pair formation protein n=1 Tax=Stenotrophomonas maltophilia RepID=Q7WZM2_STEMA
Conjugal transfer protein TrbC {ECO:0000313|EMBL:KIO48649.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
conjugal transfer protein Trbc; K03197 type IV secretion system protein VirB2
SCNpilot_cont_750_bf_scaffold_1029_14
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11665..12624)
DNA (960bp) protein (320aa)
Type II secretion system protein E n=1 Tax=Ralstonia solanacearum SD54 RepID=V5CHM1_RALSL rbh
Conjugal transfer protein TrbB {ECO:0000313|EMBL:KIO48650.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
type II secretion system protein E; K03196 type IV secretion system protein VirB11
SCNpilot_cont_750_bf_scaffold_1029_15
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13743..14777)
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y588_NITMU rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABB76083.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_750_bf_scaffold_1029_16
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14790..15143)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y589_NITMU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABB76082.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_750_bf_scaffold_1029_17
Nitrosospira multiformis, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15136..15828)
DNA (693bp) protein (231aa)
ParA protein, putative n=1 Tax=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) RepID=Q2Y590_NITMU rbh
ParA protein, putative; K03496 chromosome partitioning protein rbh
ParA protein, putative {ECO:0000313|EMBL:ABB76081.1}; TaxID=323848 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849).;"
SCNpilot_cont_750_bf_scaffold_1029_18
Nitrosospira lacus, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16652..16918
DNA (267bp) protein (89aa)
COG0286: Type I restriction-modification system methyltransferase subunit n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFR7_9PROT
WGS project CAUA00000000 data, contig 1 {ECO:0000313|EMBL:CCU61013.1}; TaxID=1288494 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira lacus.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1029_19
Nitrosospira sp. NpAV, Nitrosospira, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16988..18802
DNA (1815bp) protein (605aa)
ParB-like nuclease n=1 Tax=Nitrosospira sp. APG3 RepID=M5DFJ3_9PROT
Chromosomal partitioning protein ParB {ECO:0000313|EMBL:KIO48661.1}; TaxID=58133 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosospira.;" source="Nitrosospira sp. NpAV.;"
ParB-like nuclease; K03497 chromosome partitioning protein, ParB family
SCNpilot_cont_750_bf_scaffold_1029_20
unknown

Not on your lists

comp(18864..19340)
DNA (477bp) protein (159aa)
hypothetical protein
Displaying 20 items

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