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SCNpilot_cont_750_bf_scaffold_1043

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_1043_1
unknown

Not on your lists

43..630
DNA (588bp) protein (196aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1043_2
Desulfomonile tiedjei, Desulfomonile, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

627..1925
DNA (1299bp) protein (433aa)
Uncharacterized protein n=1 Tax=Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1) RepID=I4C246_DESTA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFM23637.1}; TaxID=706587 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Desulfomonile.;" source="Desulfomonile tiedjei (strain ATCC 49306 / DSM 6799 / DCB-1).;"
SCNpilot_cont_750_bf_scaffold_1043_3
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2287..2784)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WZN7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ34551.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1043_4
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2910..3116
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NQY4_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29895.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1043_5
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3134..3385
DNA (252bp) protein (84aa)
Gentisate 1,2-dioxygenase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GXP9_9BRAD
Gentisate 1,2-dioxygenase {ECO:0000313|EMBL:ERF82277.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1043_6
unknown

Not on your lists

comp(3589..3954)
DNA (366bp) protein (122aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1043_7
unknown

Not on your lists

comp(3947..4123)
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1043_8
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4395..5033
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CDCD1
Uncharacterized protein {ECO:0000313|EMBL:EJZ28332.1}; Flags: Fragment;; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
SCNpilot_cont_750_bf_scaffold_1043_9
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5054..5707)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WZN6_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EAQ34554.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1043_10
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5698..6444)
DNA (747bp) protein (249aa)
Prophage MuMc02, terminase, ATPase subunit, putative n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WZN0_9BRAD rbh
Prophage MuMc02, terminase, ATPase subunit, putative {ECO:0000313|EMBL:EAQ34555.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1043_11
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6444..7094)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WZN1_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EAQ34556.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_750_bf_scaffold_1043_12
Mesorhizobium sp. LNJC395A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7587..10166)
DNA (2580bp) protein (860aa)
UPI0003CF177B related cluster n=1 Tax=unknown RepID=UPI0003CF177B
virulence-associated E family protein
Virulence protein E {ECO:0000313|EMBL:ESY21733.1}; TaxID=1287275 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC395A00.;"
SCNpilot_cont_750_bf_scaffold_1043_13
unknown

Not on your lists

comp(10163..10432)
DNA (270bp) protein (90aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1043_14
unknown

Not on your lists

comp(10595..11437)
DNA (843bp) protein (281aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1043_15
unknown

Not on your lists

comp(11446..11847)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00036C7DA2
SCNpilot_cont_750_bf_scaffold_1043_16
unknown

Not on your lists

comp(11849..12481)
DNA (633bp) protein (211aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1043_17
unknown

Not on your lists

comp(12478..12684)
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1043_18
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12782..13555)
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9ABB5_RHIFH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCE97206.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_cont_750_bf_scaffold_1043_19
Halomonas salina, Halomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13552..13782)
DNA (231bp) protein (77aa)
cold-shock protein n=1 Tax=Halomonas lutea RepID=UPI00037E0FCE
Cold-shock protein {ECO:0000313|EMBL:KGE79329.1}; TaxID=42565 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Halomonadaceae; Halomonas.;" source="Halomonas salina.;"
cold-shock DNA-binding domain-containing protein; K03704 cold shock protein (beta-ribbon, CspA family)
SCNpilot_cont_750_bf_scaffold_1043_20
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13779..14003)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WZM2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ34565.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_750_bf_scaffold_1043_21
unknown

Not on your lists

comp(14098..14709)
DNA (612bp) protein (204aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1043_22
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14709..15992)
DNA (1284bp) protein (428aa)
Possible phage-related integrase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WZM1_9BRAD rbh
Possible phage-related integrase {ECO:0000313|EMBL:EAQ34567.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1043_23
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16256..16615
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I4Y0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EJN15366.1}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1043_24
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16636..17118
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QMF8_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62589.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_1043_25
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17236..18069
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SJ51_9BRAD
Multidrug DMT transporter permease {ECO:0000313|EMBL:KIZ46490.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1043_26
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18105..18344)
DNA (240bp) protein (80aa)
Fatty-acyl-CoA synthase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HLQ3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KIZ46491.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1043_27
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18560..18775
DNA (216bp) protein (72aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IW40_RHOP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KJC59494.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
SCNpilot_cont_750_bf_scaffold_1043_28
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18803..19936)
DNA (1134bp) protein (378aa)
queuine tRNA-ribosyltransferase (EC:2.4.2.29); K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29]
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
Queuine tRNA-ribosyltransferase n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VK78_RHOPX
SCNpilot_cont_750_bf_scaffold_1043_29
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19933..20871)
DNA (939bp) protein (313aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
queA; S-adenosylmethionine--tRNA ribosyltransferase-isomerase; K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-]
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PHX9_9BRAD
SCNpilot_cont_750_bf_scaffold_1043_30
unknown

Not on your lists

21257..21532
DNA (276bp) protein (92aa)

This feature has no annotations

Displaying items 1-30 of 33 in total

View Taxonomy