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SCNpilot_cont_750_bf_scaffold_1142

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_1142_1
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1036)
DNA (1035bp) protein (345aa)
carB; carbamoyl phosphate synthase large subunit (EC:6.3.5.5); K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Carbamoyl-phosphate synthase large chain n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJF4_NITHX
SCNpilot_cont_750_bf_scaffold_1142_2
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1467..2162)
DNA (696bp) protein (232aa)
Methyltransferase type 12 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJF6_NITHX
methyltransferase type 12
Methyltransferase type 12 {ECO:0000313|EMBL:ABE63641.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_1142_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2401..2931
DNA (531bp) protein (177aa)
Ferritin and Dps n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J0L7_RHOP2
Ferritin and Dps; K04047 starvation-inducible DNA-binding protein
Ferritin and Dps {ECO:0000313|EMBL:ABD05993.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_750_bf_scaffold_1142_4
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2998..3528)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TF84_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCE05122.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
SCNpilot_cont_750_bf_scaffold_1142_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3689..4186)
DNA (498bp) protein (166aa)
Bll1207 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89V51_BRADU
Phenylacetic acid degradation protein {ECO:0000313|EMBL:KIZ46163.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1142_6
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4324..5514)
DNA (1191bp) protein (397aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
carbamoyl phosphate synthase small subunit; K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
carbamoyl phosphate synthase small subunit n=1 Tax=Afipia birgiae RepID=UPI0002EAC71A
SCNpilot_cont_750_bf_scaffold_1142_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5685..6374
DNA (690bp) protein (230aa)
Alpha/beta hydrolase protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2ISH7_RHOP2 rbh
alpha/beta hydrolase rbh
Alpha/beta hydrolase protein {ECO:0000313|EMBL:ABD08833.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_750_bf_scaffold_1142_8
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6688..7272
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SNX6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD95903.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
conserved membrane hypothetical protein
SCNpilot_cont_750_bf_scaffold_1142_9
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7227..8282
DNA (1056bp) protein (352aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D2G7_BRAJP
Uncharacterized protein {ECO:0000313|EMBL:AHY49593.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1142_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8397..8852
DNA (456bp) protein (152aa)
aspartyl-tRNA amidotransferase subunit B n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036EF8EE
GatB/Yqey domain-containing protein; K09117 hypothetical protein
GatB/Yqey domain protein {ECO:0000313|EMBL:ABJ04936.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_750_bf_scaffold_1142_11
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9016..10626
DNA (1611bp) protein (537aa)
acetyl-CoA synthetase (EC:6.2.1.1); K01895 acetyl-CoA synthetase [EC:6.2.1.1]
AMP-dependent synthetase n=1 Tax=Afipia birgiae RepID=UPI000300EBF4
Uncharacterized protein {ECO:0000313|EMBL:EKS35167.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_cont_750_bf_scaffold_1142_12
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10820..11335)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0SYP7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD99324.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1142_13
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11341..11820)
DNA (480bp) protein (160aa)
Regulatory protein, ArsR n=2 Tax=Oligotropha carboxidovorans RepID=B6JC54_OLICO
regulatory protein ArsR
Uncharacterized protein {ECO:0000313|EMBL:AEI07522.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_750_bf_scaffold_1142_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11813..12127)
DNA (315bp) protein (105aa)
Transcriptional regulator, ArsR family n=2 Tax=Rhodopseudomonas palustris RepID=B3QJD3_RHOPT
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ACF00015.1}; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
SCNpilot_cont_750_bf_scaffold_1142_15
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12278..12922
DNA (645bp) protein (215aa)
Putative amino acid efflux protein, LysE family n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SDQ2_9BRAD rbh
Putative amino acid efflux protein, LysE family {ECO:0000313|EMBL:CCD92329.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
putative amino acid efflux protein, LysE family rbh
SCNpilot_cont_750_bf_scaffold_1142_16
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12925..13758)
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TF68_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:CCE05106.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein rbh
SCNpilot_cont_750_bf_scaffold_1142_17
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13828..14448)
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P358_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS35159.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
conserved hypothetical protein; putative isochorismatase family protein
SCNpilot_cont_750_bf_scaffold_1142_18
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14596..16605
DNA (2010bp) protein (670aa)
dnaG; DNA primase; K02316 DNA primase [EC:2.7.7.-]
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051044}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|SAAS:SAAS00051045};; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
DNA primase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21AP6_RHOPB
SCNpilot_cont_750_bf_scaffold_1142_19
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16803..18224)
DNA (1422bp) protein (474aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V1U4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN87860.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_cont_750_bf_scaffold_1142_20
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18916..19980
DNA (1065bp) protein (355aa)
C4-dicarboxylate transporter/malic acid transport protein n=3 Tax=Oligotropha carboxidovorans RepID=F8BMW3_OLICM rbh
C4-dicarboxylate transporter/malic acid transport protein rbh
C4-dicarboxylate transporter/malic acid transport protein {ECO:0000313|EMBL:AEI07517.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_750_bf_scaffold_1142_21
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21267..22307)
DNA (1041bp) protein (347aa)
CobQ/CobB/MinD/ParA nucleotide binding domain protein n=1 Tax=Pseudomonas fluorescens Q8r1-96 RepID=I4KI68_PSEFL rbh
CobQ/CobB/MinD/ParA nucleotide binding domain protein {ECO:0000313|EMBL:EIK64408.1}; TaxID=1038923 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens Q8r1-96.;"
regulatory protein CII rbh
SCNpilot_cont_750_bf_scaffold_1142_22
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23287..24105
DNA (819bp) protein (273aa)
Lytic murein transglycosylase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WYB1_9BRAD
Lytic murein transglycosylase {ECO:0000313|EMBL:EAQ35024.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
lytic murein transglycosylase rbh
SCNpilot_cont_750_bf_scaffold_1142_23
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24333..25538
DNA (1206bp) protein (402aa)
Diguanylate cyclase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IT93_RHOP2 rbh
diguanylate cyclase rbh
Diguanylate cyclase {ECO:0000313|EMBL:ABD08567.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_750_bf_scaffold_1142_24
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25597..26112
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QGC6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KJC50144.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1142_25
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26218..26505)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2Z7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG07194.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1142_26
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26972..27385)
DNA (414bp) protein (138aa)
Peptide methionine sulfoxide reductase MsrB {ECO:0000256|HAMAP-Rule:MF_01400}; EC=1.8.4.12 {ECO:0000256|HAMAP-Rule:MF_01400};; Peptide-methionine (R)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01400}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
methionine sulfoxide reductase B; K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
Peptide methionine sulfoxide reductase MsrB n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IZY2_RHOP2
SCNpilot_cont_750_bf_scaffold_1142_27
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27444..28163)
DNA (720bp) protein (240aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
msrA; methionine sulfoxide reductase A; K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11]
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HF69_9BRAD rbh
SCNpilot_cont_750_bf_scaffold_1142_28
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28446..28811)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQC5_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE61572.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_1142_29
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28949..30058)
DNA (1110bp) protein (370aa)
exodeoxyribonuclease V; K01144 exodeoxyribonuclease V [EC:3.1.11.5]
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00030F8741 rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS41092.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_cont_750_bf_scaffold_1142_30
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30194..30385
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QJC0_RHOPT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACF00002.1}; Flags: Precursor;; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
Displaying items 1-30 of 42 in total

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