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SCNpilot_cont_750_bf_scaffold_1258

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_1258_1
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..980
DNA (978bp) protein (326aa)
Flavoprotein TcuA n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QK72_9BRAD
Flavoprotein TcuA {ECO:0000313|EMBL:EGP08241.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
cobZ; precorrin 3B synthase CobZ
SCNpilot_cont_750_bf_scaffold_1258_2
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1104..1334
DNA (231bp) protein (77aa)
Precorrin 3B synthase CobZ n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TD50_9BRAD
Precorrin 3B synthase CobZ {ECO:0000313|EMBL:CCE04388.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
tricarballylate dehydrogenase
SCNpilot_cont_750_bf_scaffold_1258_3
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1318..2529
DNA (1212bp) protein (404aa)
Protein TcuB n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QK73_9BRAD
Protein TcuB {ECO:0000313|EMBL:EGP08242.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
CitB domain-containing protein; K13795 citrate/tricarballylate utilization protein rbh
SCNpilot_cont_750_bf_scaffold_1258_4
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2696..3907)
DNA (1212bp) protein (404aa)
Branched-chain amino acid transport system substrate-binding protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HAU4_9BRAD rbh
ABC transporter permease {ECO:0000313|EMBL:KJC60967.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
urea/short-chain binding protein of ABC transporter; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_cont_750_bf_scaffold_1258_5
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4045..4716)
DNA (672bp) protein (224aa)
RES domain-containing protein n=2 Tax=Rhizobium etli RepID=S5SST5_RHIET rbh
RES domain-containing protein rbh
RES domain-containing protein {ECO:0000313|EMBL:AGS24679.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_cont_750_bf_scaffold_1258_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4713..5273)
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0K2A1_RHILV
Uncharacterized protein {ECO:0000313|EMBL:EJC71099.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1258_7
unknown

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5352..5720
DNA (369bp) protein (123aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1258_8
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5844..7010
DNA (1167bp) protein (389aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002DDA77D rbh
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EKS40023.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
secretion protein HlyD; K15727 cobalt-zinc-cadmium resistance protein CzcB
SCNpilot_cont_750_bf_scaffold_1258_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7022..10231
DNA (3210bp) protein (1070aa)
CzcA family heavy metal efflux pump n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PN69_9BRAD rbh
CzcA family heavy metal efflux pump {ECO:0000313|EMBL:EKS39783.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
CzcA family heavy metal efflux pump; K15726 cobalt-zinc-cadmium resistance protein CzcA
SCNpilot_cont_750_bf_scaffold_1258_10
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10268..10432)
DNA (165bp) protein (55aa)
Blr6772 protein n=6 Tax=Bradyrhizobium RepID=Q89FC9_BRADU
hypothetical protein
Blr6772 protein {ECO:0000313|EMBL:BAC52037.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
SCNpilot_cont_750_bf_scaffold_1258_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10587..10898
DNA (312bp) protein (104aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q210G8_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD89218.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_750_bf_scaffold_1258_12
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11092..13164)
DNA (2073bp) protein (691aa)
Glycogen operon protein GlgX homolog {ECO:0000256|SAAS:SAAS00046872}; EC=3.2.1.- {ECO:0000256|SAAS:SAAS00055489};; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
glgX; glycosyl hydrolase (EC:3.2.1.-); K02438 glycogen operon protein GlgX [EC:3.2.1.-]
glycogen debranching protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036C4326
SCNpilot_cont_750_bf_scaffold_1258_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13155..14108)
DNA (954bp) protein (318aa)
1,4-alpha-glucan branching protein; K00700 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (stra
1,4-alpha-glucan branching enzyme GlgB n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VKT5_RHOPX
SCNpilot_cont_750_bf_scaffold_1258_14
unknown

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14661..15332
DNA (672bp) protein (224aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1258_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15453..17120)
DNA (1668bp) protein (556aa)
trehalose synthase-like protein; K05343 maltose alpha-D-glucosyltransferase [EC:5.4.99.16]
Trehalose synthase-like n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q210H2_RHOPB
Alpha-amylase {ECO:0000313|EMBL:KIZ46476.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_750_bf_scaffold_1258_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17068..18384)
DNA (1317bp) protein (439aa)
trehalose synthase-like protein; K05343 maltose alpha-D-glucosyltransferase [EC:5.4.99.16]
Trehalose synthase-like n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q210H2_RHOPB
Trehalose synthase-like {ECO:0000313|EMBL:ABD89214.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_750_bf_scaffold_1258_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18577..19290)
DNA (714bp) protein (238aa)
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase {ECO:0000256|HAMAP-Rule:MF_02124}; Short=GMPMT {ECO:0000256|HAMAP-Rule:MF_02124};; EC=2.4.99.16 {ECO:0000256|HAMAP-Rule:MF_02124};; (1->4)-alpha-D-glucan:maltose-1-phosphate alpha-D-maltosyltransferase {ECO:0000256|HAMAP-Rule:MF_02124}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IYW8_RHOP2
alpha amylase
SCNpilot_cont_750_bf_scaffold_1258_18
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19389..20225)
DNA (837bp) protein (279aa)
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q133N4_RHOPS
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase {ECO:0000313|EMBL:KIZ44477.1}; Flags: Fragment;; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
alpha amylase catalytic subunit
SCNpilot_cont_750_bf_scaffold_1258_19
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20421..21818
DNA (1398bp) protein (466aa)
4-alpha-glucanotransferase; K00705 4-alpha-glucanotransferase [EC:2.4.1.25]
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
4-alpha-glucanotransferase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q210H4_RHOPB
Displaying 19 items

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