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SCNpilot_cont_750_bf_scaffold_1333

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_1333_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..871
DNA (870bp) protein (290aa)
Cell divisionFtsK/SpoIIIE n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J372_RHOP2
cell division protein FtsK; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
Cell divisionFtsK/SpoIIIE {ECO:0000313|EMBL:ABD05088.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_750_bf_scaffold_1333_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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988..1875
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6ND29_RHOPA
Outer-membrane lipoprotein carrier protein {ECO:0000256|SAAS:SAAS00088851}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
outer membrane lipoprotein carrier protein LolA
SCNpilot_cont_750_bf_scaffold_1333_3
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2035..2850
DNA (816bp) protein (272aa)
exodeoxyribonuclease III (xth); K01142 exodeoxyribonuclease III [EC:3.1.11.2]
exodeoxyribonuclease III n=1 Tax=Afipia birgiae RepID=UPI0002ECF389
Exodeoxyribonuclease III (Xth) {ECO:0000313|EMBL:ABE60993.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_1333_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2918..4252)
DNA (1335bp) protein (445aa)
ammonia channel protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037AF5CE rbh
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
ammonium transport protein rbh
SCNpilot_cont_750_bf_scaffold_1333_5
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4329..4667)
DNA (339bp) protein (113aa)
nitrogen regulatory protein P-II 1 n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034C1B90
glnK; nitrogen regulatory protein PII; K04752 nitrogen regulatory protein P-II 2
Nitrogen regulatory protein P-II 1 {ECO:0000313|EMBL:KJC44041.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
SCNpilot_cont_750_bf_scaffold_1333_6
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4840..5673)
DNA (834bp) protein (278aa)
tesB; acyl-CoA thioesterase; K10805 acyl-CoA thioesterase II [EC:3.1.2.-]
Acyl-CoA thioesterase II n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YCT9_9BRAD
Acyl-CoA thioesterase II {ECO:0000313|EMBL:EHQ99742.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
SCNpilot_cont_750_bf_scaffold_1333_7
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6012..7232
DNA (1221bp) protein (407aa)
2-octaprenyl-6-methoxyphenyl hydroxylase; K03185 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
2-octaprenyl-6-methoxyphenyl hydroxylase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WS97_9BRAD
2-octaprenyl-6-methoxyphenyl hydroxylase {ECO:0000313|EMBL:EAQ37107.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_750_bf_scaffold_1333_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7402..8781)
DNA (1380bp) protein (460aa)
Peptidoglycan-binding domain 1 n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21CE6_RHOPB
peptidoglycan binding domain-containing protein
Peptidoglycan-binding domain 1 {ECO:0000313|EMBL:ABD85940.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_750_bf_scaffold_1333_9
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8940..9740
DNA (801bp) protein (267aa)
thiamine biosynthesis protein ThiF n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002F81A94 rbh
Pantetheine-phosphate adenylyltransferase {ECO:0000313|EMBL:ERF84547.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
UBA/THIF-type NAD/FAD binding fold
SCNpilot_cont_750_bf_scaffold_1333_10
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9959..10360)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J0U0K7_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJE49702.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
putative secreted protein
SCNpilot_cont_750_bf_scaffold_1333_11
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10677..11678)
DNA (1002bp) protein (334aa)
glyoxylate reductase (EC:1.1.1.26) rbh
Lactate dehydrogenase-like oxidoreductase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QK14_9BRAD rbh
Lactate dehydrogenase-like oxidoreductase {ECO:0000313|EMBL:EIG60120.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
SCNpilot_cont_750_bf_scaffold_1333_12
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12095..12619
DNA (525bp) protein (175aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QI65_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP08956.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1333_13
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12875..13375)
DNA (501bp) protein (167aa)
Ferric uptake regulator, Fur family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QS53_NITHX
ferric uptake regulator family protein; K09826 Fur family transcriptional regulator, iron response regulator
Ferric uptake regulator, Fur family {ECO:0000313|EMBL:ABE60944.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_1333_14
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13727..14257
DNA (531bp) protein (177aa)
3-hydroxydecanoyl-ACP dehydratase (EC:4.2.1.60); K01716 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [EC:4.2.1.60] rbh
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00405, ECO:0000256|SAAS:SAAS00064161}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00405, ECO:0000256|SAAS:SAAS00064166};; 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA {ECO:0000256|HAMAP-Rule:MF_00405}; Beta-hydroxydecanoyl thioester dehydrase {ECO:0000256|HAMAP-Rule:MF_00405}; Trans-2-decenoyl-[acyl-carrier-protein] isomerase {ECO:0000256|HAMAP-Rule:MF_00405}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobact
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=FABA_NITHX rbh
SCNpilot_cont_750_bf_scaffold_1333_15
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14329..15552
DNA (1224bp) protein (408aa)
3-oxoacyl-(Acyl carrier protein) synthase {ECO:0000313|EMBL:EAQ37160.1}; EC=2.3.1.41 {ECO:0000313|EMBL:EAQ37160.1};; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
3-oxoacyl-ACP synthase (EC:2.3.1.41); K00647 3-oxoacyl-[acyl-carrier-protein] synthase I [EC:2.3.1.41] rbh
3-oxoacyl-(Acyl carrier protein) synthase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WS44_9BRAD rbh
SCNpilot_cont_750_bf_scaffold_1333_16
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15716..16519
DNA (804bp) protein (268aa)
Enoyl-[acyl-carrier-protein] reductase [NADH] {ECO:0000256|PIRNR:PIRNR000094}; EC=1.3.1.9 {ECO:0000256|PIRNR:PIRNR000094};; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
fabI1; enoyl-ACP reductase (NADH) (EC:1.3.1.9); K00208 enoyl-[acyl-carrier protein] reductase I [EC:1.3.1.9]
enoyl-ACP reductase n=1 Tax=Afipia birgiae RepID=UPI0003048BC5
SCNpilot_cont_750_bf_scaffold_1333_17
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16653..17252)
DNA (600bp) protein (200aa)
glutathione S-transferase (EC:2.5.1.18); K00799 glutathione S-transferase [EC:2.5.1.18] rbh
Glutathione S-transferase {ECO:0000313|EMBL:ABA03299.1}; EC=2.5.1.18 {ECO:0000313|EMBL:ABA03299.1};; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
Glutathione S-transferase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SWP2_NITWN rbh
SCNpilot_cont_750_bf_scaffold_1333_18
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17465..17650)
DNA (186bp) protein (62aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
polynucleotide phosphorylase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003607E86
polyribonucleotide nucleotidyltransferase
Displaying 18 items

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