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SCNpilot_cont_750_bf_scaffold_1345

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Displaying items 1-30 of 59 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_1345_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(283..789)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3QA95_RHOPT
Uncharacterized protein {ECO:0000313|EMBL:KIZ41177.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1345_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(939..1793)
DNA (855bp) protein (285aa)
glutamine amidotransferase; K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] rbh
Glutamine amidotransferase class-I n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07VM0_RHOP5 rbh
Glutamine amidotransferase class-I {ECO:0000313|EMBL:ABJ04014.1}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_750_bf_scaffold_1345_3
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2074..2832)
DNA (759bp) protein (253aa)
short chain dehydrogenase/reductase family protein (EC:1.1.1.100); K07124
Putative short chain dehydrogenase/reductase family member {ECO:0000313|EMBL:ABQ32568.1}; EC=1.1.1.100 {ECO:0000313|EMBL:ABQ32568.1};; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
Putative short chain dehydrogenase/reductase family member n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5E8S4_BRASB
SCNpilot_cont_750_bf_scaffold_1345_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3019..3507)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P568_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS34795.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1345_5
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3756..5165)
DNA (1410bp) protein (470aa)
Family 3 adenylate cyclase n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YDC4_9BRAD
Family 3 adenylate cyclase {ECO:0000313|EMBL:EHQ99784.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1345_6
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5251..6639)
DNA (1389bp) protein (463aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000311F8B1
Cytochrome P450 {ECO:0000313|EMBL:KJC43955.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
cytochrome P450
SCNpilot_cont_750_bf_scaffold_1345_7
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6753..8159)
DNA (1407bp) protein (469aa)
twin-arginine translocation pathway signal n=1 Tax=Bradyrhizobium japonicum RepID=UPI000374EB59 rbh
Hydrolase {ECO:0000313|EMBL:KJC43954.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein rbh
SCNpilot_cont_750_bf_scaffold_1345_8
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8551..10245
DNA (1695bp) protein (565aa)
MFS transporter n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036325C0
MFS transporter {ECO:0000313|EMBL:KJC43953.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
MFS permease
SCNpilot_cont_750_bf_scaffold_1345_9
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10368..10592)
DNA (225bp) protein (75aa)
Aliphatic nitrilase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GYU6_9BRAD
Aliphatic nitrilase {ECO:0000313|EMBL:ERF82637.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1345_10
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10739..11551)
DNA (813bp) protein (271aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
leuC; isopropylmalate isomerase large subunit (EC:4.2.1.33); K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]
3-isopropylmalate dehydratase large subunit n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T5D0_9BRAD
SCNpilot_cont_750_bf_scaffold_1345_11
Thalassiosira oceanica, Thalassiosira, Thalassiosirales, Coscinodiscophyceae, Bacillariophyta, Eukaryota

Not on your lists

11637..11954
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Thalassiosira oceanica RepID=K0R4K7_THAOC
Uncharacterized protein {ECO:0000313|EMBL:EJK47525.1}; TaxID=159749 species="Eukaryota; Stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira.;" source="Thalassiosira oceanica (Marine diatom).;"
SCNpilot_cont_750_bf_scaffold_1345_12
unknown

Not on your lists

comp(12147..12257)
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1345_13
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12417..12806)
DNA (390bp) protein (130aa)
50S ribosomal protein L19 n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=RL19_BRASO
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19
50S ribosomal protein L19 {ECO:0000255|HAMAP-Rule:MF_00402}; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
SCNpilot_cont_750_bf_scaffold_1345_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12915..13646)
DNA (732bp) protein (244aa)
tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31); K00554 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] rbh
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VJ04_RHOPX rbh
SCNpilot_cont_750_bf_scaffold_1345_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13794..14321)
DNA (528bp) protein (176aa)
Ribosome maturation factor RimM n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z1D7_9BRAD
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
rimM; 16S rRNA-processing protein
SCNpilot_cont_750_bf_scaffold_1345_16
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14333..14665)
DNA (333bp) protein (111aa)
30S ribosomal protein S16 n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002EF285D
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
rpsP; 30S ribosomal protein S16; K02959 small subunit ribosomal protein S16
SCNpilot_cont_750_bf_scaffold_1345_17
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(14730..15218)
DNA (489bp) protein (163aa)
Signal recognition particle protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SNV9_NITWN
Signal recognition particle protein; K03106 signal recognition particle subunit SRP54
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_750_bf_scaffold_1345_18
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15220..16302
DNA (1083bp) protein (361aa)
branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase n=1 Tax=Brachybacterium paraconglomeratum RepID=UPI00026C6F86
Uncharacterized protein {ECO:0000313|EMBL:KHS43294.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase
SCNpilot_cont_750_bf_scaffold_1345_19
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16412..17323)
DNA (912bp) protein (304aa)
NAD-dependent epimerase/dehydratase; K01784 UDP-glucose 4-epimerase [EC:5.1.3.2]
UDP-sugar epimerase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WUC9_9BRAD
UDP-sugar epimerase {ECO:0000313|EMBL:EAQ36414.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_750_bf_scaffold_1345_20
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17492..18556
DNA (1065bp) protein (355aa)
Putative Zn-dependent hydrolase of beta-lactamase n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3CQP3_9BRAD rbh
Membrane protein {ECO:0000313|EMBL:KJC61363.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
twin-arginine translocation pathway signal rbh
SCNpilot_cont_750_bf_scaffold_1345_21
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18640..19356)
DNA (717bp) protein (239aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QHJ1_NITHX
hypothetical protein; K09807 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE64306.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_1345_22
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19362..19745)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DFE1_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL05745.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_cont_750_bf_scaffold_1345_23
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20285..21157
DNA (873bp) protein (291aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
dapF; diaminopimelate epimerase (EC:5.1.1.7); K01778 diaminopimelate epimerase [EC:5.1.1.7]
Diaminopimelate epimerase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P949_9BRAD
SCNpilot_cont_750_bf_scaffold_1345_24
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21269..22330
DNA (1062bp) protein (354aa)
2-methylthioadenine synthase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003051E4A
2-methylthioadenine synthase {ECO:0000313|EMBL:KJC61359.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
MiaB-like tRNA modifying protein
SCNpilot_cont_750_bf_scaffold_1345_25
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22472..23170)
DNA (699bp) protein (233aa)
hypothetical protein; K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29] rbh
pseudouridine synthase n=1 Tax=Bradyrhizobium japonicum RepID=UPI000366D30B rbh
23S RNA-specific pseudouridylate synthase {ECO:0000313|EMBL:EIG60414.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
SCNpilot_cont_750_bf_scaffold_1345_26
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23322..24269
DNA (948bp) protein (316aa)
Signal recognition particle receptor FtsY n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SVV8_NITWN
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
cell division transporter substrate-binding protein FtsY; K03110 fused signal recognition particle receptor
SCNpilot_cont_750_bf_scaffold_1345_27
Bradyrhizobium sp. ORS 278, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24271..24867
DNA (597bp) protein (199aa)
Probable intracellular septation protein A n=1 Tax=Bradyrhizobium sp. (strain ORS278) RepID=YCIB_BRASO
intracellular septation protein A; K06190 intracellular septation protein
Probable intracellular septation protein A {ECO:0000255|HAMAP-Rule:MF_00189}; TaxID=114615 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain ORS278).;"
SCNpilot_cont_750_bf_scaffold_1345_28
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24942..25301)
DNA (360bp) protein (120aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21CV1_RHOPB
DNA-binding protein {ECO:0000313|EMBL:KIZ40571.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1345_29
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25414..26013)
DNA (600bp) protein (200aa)
Periplasmic protein thiol n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13DT1_RHOPS rbh
periplasmic protein thiol; K02199 cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE rbh
Periplasmic protein thiol {ECO:0000313|EMBL:ABE37758.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_750_bf_scaffold_1345_30
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26010..26189)
DNA (180bp) protein (60aa)
hemagglutination activity protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000310437C
Hemagglutination activity protein {ECO:0000313|EMBL:KJC43019.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
cycX; heme exporter protein D
Displaying items 1-30 of 59 in total

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