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SCNpilot_cont_750_bf_scaffold_1429

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_1429_1
unknown

Not on your lists

1..138
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1429_2
Actinomyces massiliensis, Actinomyces, Actinomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

135..524
DNA (390bp) protein (130aa)
hypothetical protein n=1 Tax=Actinomyces massiliensis RepID=UPI0002D7DDAF
Transcriptional regulator, MerR family {ECO:0000313|EMBL:EJF47214.1}; TaxID=1125718 species="Bacteria; Actinobacteria; Actinomycetales; Actinomycetaceae; Actinomyces.;" source="Actinomyces massiliensis F0489.;"
MerR family transcriptional regulator
SCNpilot_cont_750_bf_scaffold_1429_3
Blastococcus saxobsidens, Blastococcus, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(646..1170)
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RP25_BLASD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCG02686.1}; TaxID=1146883 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Blastococcus.;" source="Blastococcus saxobsidens (strain DD2).;"
SCNpilot_cont_750_bf_scaffold_1429_4
Mycobacterium arupense, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1167..1502)
DNA (336bp) protein (112aa)
Transcriptional regulator, XRE family (Modular protein) n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RP24_BLASD
Uncharacterized protein {ECO:0000313|EMBL:KKC00356.1}; TaxID=342002 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium terrae complex.;" source="Mycobacterium arupense.;"
XRE family transcriptional regulator
SCNpilot_cont_750_bf_scaffold_1429_5
Streptomyces rimosus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1649..2542)
DNA (894bp) protein (298aa)
hypothetical protein n=1 Tax=Actinopolymorpha alba RepID=UPI00036D4CC1
Oxidoreductase {ECO:0000313|EMBL:ELQ77251.1}; TaxID=1265868 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rimosus subsp. rimosus ATCC 10970.;"
pyridine nucleotide-disulfide oxidoreductase dimerization subunit
SCNpilot_cont_750_bf_scaffold_1429_6
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2539..3009)
DNA (471bp) protein (157aa)
dihydrolipoyl dehydrogenase (EC:1.8.1.4)
Dihydrolipoyl dehydrogenase {ECO:0000313|EMBL:CCH86917.1}; EC=1.8.1.4 {ECO:0000313|EMBL:CCH86917.1};; TaxID=1144889 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
Dihydrolipoyl dehydrogenase n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4EU54_MODMB
SCNpilot_cont_750_bf_scaffold_1429_7
Saccharothrix espanaensis, Saccharothrix, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3247..3783
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 / NBRC 15066 / NRRL 15764) RepID=K0K4U1_SACES
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH31538.1}; TaxID=1179773 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharothrix.;" source="Saccharothrix espanaensis (strain ATCC 51144 / DSM 44229 / JCM 9112 /; NBRC 15066 / NRRL 15764).;"
SCNpilot_cont_750_bf_scaffold_1429_8
unknown

Not on your lists

comp(4065..4388)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Blastococcus saxobsidens (strain DD2) RepID=H6RQ88_BLASD
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1429_9
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4985..6223
DNA (1239bp) protein (413aa)
Rieske (2Fe-2S) domain protein n=1 Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LR60_ACIC1
Rieske (2Fe-2S) domain-containing protein
Rieske (2Fe-2S) domain protein {ECO:0000313|EMBL:ABK51920.1}; TaxID=351607 species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
SCNpilot_cont_750_bf_scaffold_1429_10
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6220..6984
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XFQ5_NAKMY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV78016.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
SCNpilot_cont_750_bf_scaffold_1429_11
Streptomyces viridochromogenes, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6981..8333
DNA (1353bp) protein (451aa)
hypothetical protein n=1 Tax=Sciscionella marina RepID=UPI0003798046 rbh
Ligase {ECO:0000313|EMBL:EFL30571.1}; TaxID=591159 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces viridochromogenes DSM 40736.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1429_12
Actinopolyspora erythraea, Actinopolyspora, Actinopolysporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8323..9051
DNA (729bp) protein (243aa)
hypothetical protein n=1 Tax=Sciscionella marina RepID=UPI0003774108
Glutamine amidotransferase {ECO:0000313|EMBL:KGI81460.1}; TaxID=414996 species="Bacteria; Actinobacteria; Actinopolysporales; Actinopolysporaceae; Actinopolyspora.;" source="Actinopolyspora erythraea.;"
cobyric acid synthase; K07009
SCNpilot_cont_750_bf_scaffold_1429_13
Streptomyces sp. NRRL S-495, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9079..10092)
DNA (1014bp) protein (338aa)
Beta-lactamase ROB-1 (EC:3.5.2.6)
Beta-lactamase ROB-1 n=1 Tax=Actinoplanes sp. (strain ATCC 31044 / CBS 674.73 / SE50/110) RepID=G8S223_ACTS5
Uncharacterized protein {ECO:0000313|EMBL:KJY28368.1}; TaxID=1609133 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces sp. NRRL S-495.;"
SCNpilot_cont_750_bf_scaffold_1429_14
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10194..11174)
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) RepID=A0LRE7_ACIC1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABK52007.1}; Flags: Precursor;; TaxID=351607 species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
SCNpilot_cont_750_bf_scaffold_1429_15

Not on your lists

comp(11775..12581)
DNA (807bp) protein (269aa)
Uncharacterized protein (Fragment) n=1 Tax=Petromyzon marinus RepID=S4RJ13_PETMA
Uncharacterized protein {ECO:0000313|EMBL:AIF18881.1}; TaxID=1456524 species="Archaea; Euryarchaeota; environmental samples.;" source="uncultured marine group II/III euryarchaeote KM3_84_G11.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1429_16
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12629..14137)
DNA (1509bp) protein (503aa)
mprB; two-component system histidine kinase; K07653 two-component system, OmpR family, sensor histidine kinase MprB [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=713604 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
Two-component system histidine kinase n=3 Tax=Amycolatopsis mediterranei RepID=D8I8Y5_AMYMU
SCNpilot_cont_750_bf_scaffold_1429_17
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14134..14733)
DNA (600bp) protein (200aa)
Two-component system response regulator n=3 Tax=Amycolatopsis mediterranei RepID=D8HMG4_AMYMU
mprA; two-component system response regulator; K07669 two-component system, OmpR family, response regulator MprA
Two-component system response regulator {ECO:0000313|EMBL:AEK42245.1}; TaxID=713604 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
SCNpilot_cont_750_bf_scaffold_1429_18
Micromonospora carbonacea, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14730..15641)
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Smaragdicoccus niigatensis RepID=UPI0003803107
Micromonospora carbonacea strain JXNU-1 contig3, whole genome shotgun sequence {ECO:0000313|EMBL:KIR62080.1}; TaxID=47853 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora carbonacea.;"
ApbE family lipoprotein; K03734 thiamine biosynthesis lipoprotein
SCNpilot_cont_750_bf_scaffold_1429_19
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15655..16254)
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Cellulomonas sp. JC225 RepID=UPI00035CA074
FMN-binding domain protein {ECO:0000313|EMBL:KJL34695.1}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
FMN-binding domain protein
SCNpilot_cont_750_bf_scaffold_1429_20
Knoellia aerolata, Knoellia, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16407..16880)
DNA (474bp) protein (158aa)
hypothetical protein n=1 Tax=Streptomyces sp. R1-NS-10 RepID=UPI00037CD220
Oxidoreductase {ECO:0000313|EMBL:KGN40491.1}; TaxID=1385519 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Knoellia.;" source="Knoellia aerolata DSM 18566.;"
ferric reductase domain protein transmembrane component domain
SCNpilot_cont_750_bf_scaffold_1429_21
Actinoplanes sp. N902-109, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16874..17746)
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Dehalobacter sp. FTH1 RepID=UPI000377A899
oxidoreductase
Oxidoreductase {ECO:0000313|EMBL:AGL15558.1}; TaxID=649831 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes sp. N902-109.;"
SCNpilot_cont_750_bf_scaffold_1429_22
Lechevalieria aerocolonigenes, Lechevalieria, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17975..18478)
DNA (504bp) protein (168aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=68170 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Lechevalieria.;" source="Lechevalieria aerocolonigenes (Nocardia aerocolonigenes); (Saccharothrix aerocolonigenes).;"
3-dehydroquinate dehydratase n=1 Tax=Propionibacterium sp. HGH0353 RepID=S3YB15_9ACTO
aroQ; 3-dehydroquinate dehydratase II
SCNpilot_cont_750_bf_scaffold_1429_23
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18537..19325)
DNA (789bp) protein (263aa)
aroB; 3-dehydroquinate synthase (EC:4.2.3.4); K01735 3-dehydroquinate synthase [EC:4.2.3.4]
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
3-dehydroquinate synthase n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XJM3_NAKMY
SCNpilot_cont_750_bf_scaffold_1429_24
unknown

Not on your lists

comp(19322..19594)
DNA (273bp) protein (91aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1429_25
Saccharopolyspora rectivirgula, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19591..20016)
DNA (426bp) protein (142aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=28042 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora rectivirgula.;"
aroK; shikimate kinase I (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71]
hypothetical protein n=1 Tax=Actinokineospora enzanensis RepID=UPI00036E41B0
SCNpilot_cont_750_bf_scaffold_1429_26
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20068..21312)
DNA (1245bp) protein (415aa)
chorismate synthase (EC:4.2.3.5); K01736 chorismate synthase [EC:4.2.3.5] rbh
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
Chorismate synthase n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XJM5_NAKMY rbh
SCNpilot_cont_750_bf_scaffold_1429_27
Amycolatopsis vancoresmycina, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21408..22262)
DNA (855bp) protein (285aa)
Lysine decarboxylase n=1 Tax=Amycolatopsis vancoresmycina DSM 44592 RepID=R1G1J8_9PSEU
Lysine decarboxylase {ECO:0000313|EMBL:EOD65403.1}; TaxID=1292037 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis vancoresmycina DSM 44592.;"
lysine decarboxylase
SCNpilot_cont_750_bf_scaffold_1429_28
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22382..23452)
DNA (1071bp) protein (357aa)
succinyl-diaminopimelate desuccinylase; K01439 succinyl-diaminopimelate desuccinylase [EC:3.5.1.18]
Succinyl-diaminopimelate desuccinylase n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XJM8_NAKMY
Succinyl-diaminopimelate desuccinylase {ECO:0000313|EMBL:ACV80589.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
SCNpilot_cont_750_bf_scaffold_1429_29
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23638..24597
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8XJM9_NAKMY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV80590.1}; Flags: Precursor;; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
SCNpilot_cont_750_bf_scaffold_1429_30
Pseudonocardia dioxanivorans, Pseudonocardia, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24704..25147
DNA (444bp) protein (148aa)
CBS domain containing protein n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4CJW7_PSEUX
CBS domain-containing protein
CBS domain containing protein {ECO:0000313|EMBL:AEA26992.1}; TaxID=675635 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Pseudonocardia.;" source="Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM; 13855 / CB1190).;"
Displaying items 1-30 of 39 in total

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