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SCNpilot_cont_750_bf_scaffold_1638

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_1638_1
unknown

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1..117
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1638_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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387..1772
DNA (1386bp) protein (462aa)
Peptidase M48, Ste24p n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07VF0_RHOP5
peptidase M48, Ste24p
Peptidase M48, Ste24p {ECO:0000313|EMBL:ABJ04084.1}; Flags: Precursor;; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_750_bf_scaffold_1638_3
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1870..2685)
DNA (816bp) protein (272aa)
CarD family transcriptional regulator n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IEN9_9BRAD
CarD family transcriptional regulator {ECO:0000313|EMBL:ERF80904.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
CarD family transcriptional regulator; K07736 CarD family transcriptional regulator
SCNpilot_cont_750_bf_scaffold_1638_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3096..3434)
DNA (339bp) protein (113aa)
Ferredoxin n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VG55_RHOPX
ferredoxin; K05524 ferredoxin
Ferredoxin {ECO:0000313|EMBL:ADU41779.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_cont_750_bf_scaffold_1638_5
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3519..3806)
DNA (288bp) protein (96aa)
RNA-binding S4 n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13EG9_RHOPS
RNA-binding S4; K04762 ribosome-associated heat shock protein Hsp15
RNA-binding protein S4 {ECO:0000313|EMBL:KJC60457.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
SCNpilot_cont_750_bf_scaffold_1638_6
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3821..7294)
DNA (3474bp) protein (1158aa)
Helicase-like protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQV3_NITHX rbh
Helicase {ECO:0000313|EMBL:KIZ42154.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
helicase-like protein rbh
SCNpilot_cont_750_bf_scaffold_1638_7
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7659..8585)
DNA (927bp) protein (309aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21BW7_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETR78147.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
SCNpilot_cont_750_bf_scaffold_1638_8
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8900..9064
DNA (165bp) protein (55aa)
50S ribosomal protein L28 n=2 Tax=Oligotropha carboxidovorans RepID=RL28_OLICO
rpmB; 50S ribosomal protein L28; K02902 large subunit ribosomal protein L28
50S ribosomal protein L28 {ECO:0000255|HAMAP-Rule:MF_00373}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_750_bf_scaffold_1638_9
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9261..9962
DNA (702bp) protein (234aa)
hypothetical protein; K15256 tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI00036DCA74
Methyltransferase {ECO:0000313|EMBL:KKC35645.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
SCNpilot_cont_750_bf_scaffold_1638_10
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9972..11291)
DNA (1320bp) protein (440aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H1C6_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:ERF83557.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
major facilitator superfamily protein
SCNpilot_cont_750_bf_scaffold_1638_11
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11350..12063
DNA (714bp) protein (238aa)
Long-chain acyl-CoA synthetase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HFH2_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig163, whole genome shotgun sequence {ECO:0000313|EMBL:KIU51840.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
TetR family transcriptional regulator
SCNpilot_cont_750_bf_scaffold_1638_12
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12254..12904)
DNA (651bp) protein (217aa)
Haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3CRX0_9BRAD rbh
Haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED {ECO:0000313|EMBL:EJN11404.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
HAD family hydrolase; K07025 putative hydrolase of the HAD superfamily
SCNpilot_cont_750_bf_scaffold_1638_13
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13115..14227)
DNA (1113bp) protein (371aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JB95_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI07365.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_750_bf_scaffold_1638_14
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14522..15733)
DNA (1212bp) protein (404aa)
peptidase M29, aminopeptidase II; K01269 aminopeptidase [EC:3.4.11.-]
Aminopeptidase T, Metallo peptidase, MEROPS family M29 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QK79_NITHX
Aminopeptidase T, Metallo peptidase, MEROPS family M29 {ECO:0000313|EMBL:ABE63368.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_1638_15
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15886..17790
DNA (1905bp) protein (635aa)
Transcriptional activator of acetoin/glycerol metabolism n=1 Tax=Bradyrhizobium sp. YR681 RepID=J2WKG4_9BRAD rbh
Transcriptional activator of acetoin/glycerol metabolism {ECO:0000313|EMBL:EJN13085.1}; Flags: Precursor;; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
transcriptional regulator rbh
SCNpilot_cont_750_bf_scaffold_1638_16
bacterium YEK0313, Bacteria

Not on your lists

comp(18073..18621)
DNA (549bp) protein (183aa)
4-hydroxyphenylacetate-3-monooxygenase small chain n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HGY0_9BRAD
4-hydroxyphenylacetate 3-monooxygenase reductase component {ECO:0000313|EMBL:CEJ11387.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1638_17
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18846..19946)
DNA (1101bp) protein (367aa)
luciferase-like monooxygenase (EC:1.14.-.-); K00517 [EC:1.14.-.-]
Putative Luciferase-like monooxygenase {ECO:0000313|EMBL:ABQ39408.1}; EC=1.14.-.- {ECO:0000313|EMBL:ABQ39408.1};; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
Putative Luciferase-like monooxygenase n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ETB4_BRASB
SCNpilot_cont_750_bf_scaffold_1638_18
Burkholderia sp. AU4i, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(20302..21414)
DNA (1113bp) protein (371aa)
oxidoreductase n=1 Tax=Burkholderia bryophila RepID=UPI0003686352 rbh
NADH:flavin oxidoreductase, Old Yellow Enzyme family {ECO:0000313|EMBL:ERJ37103.1}; TaxID=1335308 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia sp. AU4i.;"
NADH:flavin oxidoreductase rbh
SCNpilot_cont_750_bf_scaffold_1638_19
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21510..22526)
DNA (1017bp) protein (339aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21BX0_RHOPB
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:KIZ48084.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1638_20
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(22959..24872)
DNA (1914bp) protein (638aa)
cobalt chelatase, pCobT subunit (EC:6.6.1.2); K09883 cobaltochelatase CobT [EC:6.6.1.2] rbh
Cobalt chelatase, pCobT subunit n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13EG3_RHOPS rbh
Cobalt chelatase {ECO:0000313|EMBL:KIZ48070.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_750_bf_scaffold_1638_21
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(25037..25162)
DNA (126bp) protein (42aa)
cobalt chelatase small subunit (EC:6.6.1.2); K09882 cobaltochelatase CobS [EC:6.6.1.2]
Cobaltochelatase CobS subunit n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QQV9_NITHX
Cobalamin biosynthesis protein CobS {ECO:0000313|EMBL:KIZ48072.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
Displaying 21 items

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