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SCNpilot_cont_750_bf_scaffold_1687

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_1687_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..948
DNA (948bp) protein (316aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=1163409 species="Bacteria; Pr
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRC3_9GAMM
ribosomal protein S12 methylthiotransferase RimO
SCNpilot_cont_750_bf_scaffold_1687_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1034..1906
DNA (873bp) protein (291aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WLD5_9GAMM
Protein of unknown function (DUF3025)
Uncharacterized protein {ECO:0000313|EMBL:AGG88482.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_1687_3
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2102..3097
DNA (996bp) protein (332aa)
Phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NFU6_9GAMM rbh
phosphate/phosphite/phosphonate ABC transporters, periplasmic binding protein rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_750_bf_scaffold_1687_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3111..3620)
DNA (510bp) protein (170aa)
Transcription elongation factor GreB n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRC5_9GAMM
Transcription elongation factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; Transcript cleavage factor GreB {ECO:0000256|HAMAP-Rule:MF_00930}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
transcription elongation factor GreB
SCNpilot_cont_750_bf_scaffold_1687_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3617..4867)
DNA (1251bp) protein (417aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRC6_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM02018.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1687_6
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5112..5672
DNA (561bp) protein (187aa)
Uncharacterised protein {ECO:0000313|EMBL:CRD95493.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
SCNpilot_cont_750_bf_scaffold_1687_7
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6006..6275
DNA (270bp) protein (90aa)
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_750_bf_scaffold_1687_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6370..7848
DNA (1479bp) protein (493aa)
Soluble lytic murein transglycosylase-like protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NEV6_9GAMM rbh
soluble lytic murein transglycosylase-like protein rbh
Soluble lytic murein transglycosylase-like protein {ECO:0000313|EMBL:AGG88487.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_1687_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7872..8315)
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NFV0_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG88488.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
SCNpilot_cont_750_bf_scaffold_1687_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8426..9295)
DNA (870bp) protein (290aa)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00662, ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|HAMAP-Rule:MF_00662, ECO:0000256|SAAS:SAAS00093350};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Phosphatidylserine decarboxylase proenzyme n=1 Tax=Rhodanobacter denitrificans RepID=I4WLE2_9GAMM
phosphatidylserine decarboxylase precursor
SCNpilot_cont_750_bf_scaffold_1687_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9358..10284
DNA (927bp) protein (309aa)
(LSU ribosomal protein L3P)-glutamine N5-methyltransferase (EC:2.1.1.-)
50S ribosomal protein L3 glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02125}; Short=L3 MTase {ECO:0000256|HAMAP-Rule:MF_02125};; EC=2.1.1.298 {ECO:0000256|HAMAP-Rule:MF_02125};; N5-glutamine methyltransferase PrmB {ECO:0000256|HAMAP-Rule:MF_02125}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
50S ribosomal protein L3 glutamine methyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NCS7_9GAMM
SCNpilot_cont_750_bf_scaffold_1687_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10288..10827
DNA (540bp) protein (180aa)
Acetyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WLE4_9GAMM
Acetyltransferase {ECO:0000313|EMBL:EIM02024.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
acetyltransferase, ribosomal protein N-acetylase
SCNpilot_cont_750_bf_scaffold_1687_13
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10945..12033
DNA (1089bp) protein (363aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
chorismate synthase (EC:4.2.3.5) rbh
Chorismate synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRD3_9GAMM rbh
SCNpilot_cont_750_bf_scaffold_1687_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12064..13053
DNA (990bp) protein (330aa)
Lactate dehydrogenase-like oxidoreductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W667_9GAMM rbh
Lactate dehydrogenase-like oxidoreductase {ECO:0000313|EMBL:EIL94958.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
lactate dehydrogenase-like oxidoreductase
SCNpilot_cont_750_bf_scaffold_1687_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13088..14119
DNA (1032bp) protein (344aa)
aspartate-semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Aspartate-semialdehyde dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WLE7_9GAMM
SCNpilot_cont_750_bf_scaffold_1687_16
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14122..14418
DNA (297bp) protein (99aa)
Uncharacterized protein n=2 Tax=Rhodanobacter denitrificans RepID=I4WLE8_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_750_bf_scaffold_1687_17
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14589..16832
DNA (2244bp) protein (748aa)
FimV N-terminal domain-containing protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRD8_9GAMM rbh
FimV N-terminal domain-containing protein {ECO:0000313|EMBL:EIM02030.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
FimV N-terminal domain protein rbh
SCNpilot_cont_750_bf_scaffold_1687_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16953..17735
DNA (783bp) protein (261aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
tRNA pseudouridine synthase A n=1 Tax=Rhodanobacter denitrificans RepID=I4WLF0_9GAMM
pseudouridylate synthase I
SCNpilot_cont_750_bf_scaffold_1687_19
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17756..19285
DNA (1530bp) protein (510aa)
Pass1-like protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRE1_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_cont_750_bf_scaffold_1687_20
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19344..19862
DNA (519bp) protein (173aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
tryptophan synthase, beta chain (EC:4.2.1.20)
Tryptophan synthase beta chain n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRE2_9GAMM
Displaying 20 items

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