ggKbase home page

SCNpilot_cont_750_bf_scaffold_1750

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_1750_1
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..350
DNA (348bp) protein (116aa)
ABC transporter, periplasmic substrate-binding protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QKE1_9BRAD
ABC transporter, periplasmic substrate-binding protein {ECO:0000313|EMBL:EGP08310.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
extracellular solute-binding protein
SCNpilot_cont_750_bf_scaffold_1750_2
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

418..1191
DNA (774bp) protein (258aa)
Maltose/maltodextrin ABC transporter, permease protein n=2 Tax=Bradyrhizobiaceae RepID=F7QKE2_9BRAD
Maltose/maltodextrin ABC transporter, permease protein {ECO:0000313|EMBL:EGP08311.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
binding-protein-dependent transport systems inner membrane component; K02025 multiple sugar transport system permease protein
SCNpilot_cont_750_bf_scaffold_1750_3
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1191..2024
DNA (834bp) protein (278aa)
Maltose/maltodextrin ABC transporter, permease protein n=2 Tax=Bradyrhizobiaceae RepID=F7QKE3_9BRAD rbh
Maltose/maltodextrin ABC transporter, permease protein {ECO:0000313|EMBL:EGP08312.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
binding-protein-dependent transport systems inner membrane component; K02026 multiple sugar transport system permease protein rbh
SCNpilot_cont_750_bf_scaffold_1750_4
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2035..2811
DNA (777bp) protein (259aa)
3-oxoacyl-(Acyl-carrier protein) reductase {ECO:0000313|EMBL:EGP08313.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EGP08313.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
3-oxoacyl-(Acyl-carrier protein) reductase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QKE4_9BRAD rbh
short-chain dehydrogenase/reductase SDR
SCNpilot_cont_750_bf_scaffold_1750_5
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2808..3887
DNA (1080bp) protein (360aa)
gldA; glycerol dehydrogenase (EC:1.1.1.6); K00005 glycerol dehydrogenase [EC:1.1.1.6] rbh
Iron-containing alcohol dehydrogenase n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WJ29_VEREI rbh
Iron-containing alcohol dehydrogenase {ECO:0000313|EMBL:ABM57636.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
SCNpilot_cont_750_bf_scaffold_1750_6
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4197..6431
DNA (2235bp) protein (745aa)
Isocitrate dehydrogenase (NADP) {ECO:0000313|EMBL:EGP06875.1}; EC=1.1.1.42 {ECO:0000313|EMBL:EGP06875.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
isocitrate dehydrogenase, NADP-dependent (EC:1.1.1.42); K00031 isocitrate dehydrogenase [EC:1.1.1.42] rbh
Isocitrate dehydrogenase (NADP) n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QPA4_9BRAD rbh
SCNpilot_cont_750_bf_scaffold_1750_7
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6619..10305)
DNA (3687bp) protein (1229aa)
Bifunctional PutA protein includes: Proline dehydrogenase Delta-1-pyrroline-5-carboxylate dehydrogenase {ECO:0000313|EMBL:ACP23901.1}; EC=1.5.99.8 {ECO:0000313|EMBL:ACP23901.1};; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
putA1; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (EC:1.5.99.8); K13821 proline dehydrogenase / delta 1-pyrroline-5-carboxylate dehydrogenase [EC:1.5.99.8 1.5.1.12]
Bifunctional PutA protein includes: Proline dehydrogenase Delta-1-pyrroline-5-carboxylate dehydrogenase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MF64_RHISN
SCNpilot_cont_750_bf_scaffold_1750_8
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10434..10880
DNA (447bp) protein (149aa)
Histone family protein DNA-binding protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07JB3_RHOP5
DNA-binding protein {ECO:0000313|EMBL:KJC46745.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
histone family protein DNA-binding protein
SCNpilot_cont_750_bf_scaffold_1750_9
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11179..12036)
DNA (858bp) protein (286aa)
DNA repair protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003817E57
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1750_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12107..14779
DNA (2673bp) protein (891aa)
ligD; ATP-dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1]
ATP dependent DNA ligase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q210G6_RHOPB
ATP dependent DNA ligase {ECO:0000313|EMBL:ABD89220.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_750_bf_scaffold_1750_11
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15026..16573)
DNA (1548bp) protein (516aa)
carboxypeptidase-related protein (EC:3.4.16.-)
carboxypeptidase n=1 Tax=Rhizobium leguminosarum RepID=UPI000380B39F
Carboxypeptidase {ECO:0000313|EMBL:AHF86594.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
SCNpilot_cont_750_bf_scaffold_1750_12
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16940..17311)
DNA (372bp) protein (124aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8P3H3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09980.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1750_13
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17489..17719
DNA (231bp) protein (77aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QG37_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP09979.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1750_14
unknown

Not on your lists

comp(17891..18085)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1750_15
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18104..18457)
DNA (354bp) protein (118aa)
NAD(P)H dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138}; EC=1.6.5.2 {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138};; NAD(P)H:quinone oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01017}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
wrbA; NAD(P)H:quinone oxidoreductase, type IV (EC:1.6.5.2); K03809 Trp repressor binding protein
NAD(P)H dehydrogenase (quinone) n=2 Tax=Bradyrhizobiaceae RepID=F7QG34_9BRAD
SCNpilot_cont_750_bf_scaffold_1750_16
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18781..19479)
DNA (699bp) protein (233aa)
Pirin n=2 Tax=Oligotropha carboxidovorans RepID=B6JBZ7_OLICO
pirin family protein; K06911
Pirin family protein {ECO:0000313|EMBL:AEI07576.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_750_bf_scaffold_1750_17
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19588..20493
DNA (906bp) protein (302aa)
Transcriptional regulator, LysR family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V379_9BRAD
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EFI52409.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
LysR family transcriptional regulator
SCNpilot_cont_750_bf_scaffold_1750_18
Methylobacterium radiotolerans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20775..21860
DNA (1086bp) protein (362aa)
dihydroorotase (EC:3.5.2.3); K01465 dihydroorotase [EC:3.5.2.3] rbh
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00219, ECO:0000256|RuleBase:RU003440}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00219};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00219, ECO:0000256|RuleBase:RU003440};; TaxID=426355 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM; 2831).;"
Dihydroorotase n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1LXE7_METRJ rbh
SCNpilot_cont_750_bf_scaffold_1750_19
Devosia geojensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22269..24254
DNA (1986bp) protein (662aa)
Malic enzyme {ECO:0000313|EMBL:KKB13138.1}; EC=1.1.1.40 {ECO:0000313|EMBL:KKB13138.1};; TaxID=443610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia geojensis.;"
NADP-dependent malic enzyme; K00029 malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+) [EC:1.1.1.40]
NADP-dependent malic enzyme n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RB98_PELHB
SCNpilot_cont_750_bf_scaffold_1750_20
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24462..24695)
DNA (234bp) protein (78aa)
leuD; isopropylmalate isomerase small subunit (EC:4.2.1.33); K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]
3-isopropylmalate dehydratase small subunit {ECO:0000255|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000255|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000255|HAMAP-Rule:MF_01031}; Short=IPMI {ECO:0000255|HAMAP-Rule:MF_01031};; Isopropylmalate isomerase {ECO:0000255|HAMAP-Rule:MF_01031}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
3-isopropylmalate dehydratase small subunit n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=LEUD_NITWN
Displaying 20 items

View Taxonomy