ggKbase home page

SCNpilot_cont_750_bf_scaffold_1817

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_1817_1
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..151)
DNA (150bp) protein (50aa)
Two-component cell cycle transcriptional regulator ctrA n=5 Tax=Bradyrhizobium RepID=A4YNB0_BRASO
two-component response regulator; K13584 two-component system, cell cycle response regulator CtrA
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain {ECO:0000313|EMBL:EHR01160.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
SCNpilot_cont_750_bf_scaffold_1817_2
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

518..1843
DNA (1326bp) protein (442aa)
fliI; flagellum-specific ATP synthase (EC:3.6.3.14); K02412 flagellum-specific ATP synthase [EC:3.6.3.14]
ATP synthase n=1 Tax=Afipia birgiae RepID=UPI000307DECF rbh
Flagellar protein export ATPase FliI {ECO:0000313|EMBL:EKS36003.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_cont_750_bf_scaffold_1817_3
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1949..2368
DNA (420bp) protein (140aa)
Flagellar protein FliJ n=2 Tax=Bradyrhizobiaceae RepID=F7QRM9_9BRAD
Flagellar protein FliJ {ECO:0000313|EMBL:EGP06240.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
flagellar export FliJ
SCNpilot_cont_750_bf_scaffold_1817_4
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2696..2896)
DNA (201bp) protein (67aa)
Putative uncharacterized protein n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SV96_NITWN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABA03795.1}; Flags: Precursor;; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_750_bf_scaffold_1817_5
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3248..5377)
DNA (2130bp) protein (710aa)
Flagellar biosynthesis protein FlhA n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QI50_NITHX
flhA; flagellar biosynthesis protein FlhA; K02400 flagellar biosynthesis protein FlhA
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:ABE64097.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_1817_6
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5874..7115
DNA (1242bp) protein (414aa)
Haloacetate dehalogenase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H5W8_9BRAD rbh
Haloacetate dehalogenase {ECO:0000313|EMBL:ERF79856.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
major facilitator transporter
SCNpilot_cont_750_bf_scaffold_1817_7
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7265..9370
DNA (2106bp) protein (702aa)
TonB-dependent receptor n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QI51_NITHX
TonB-dependent receptor {ECO:0000313|EMBL:ABE64096.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
TonB-dependent receptor
SCNpilot_cont_750_bf_scaffold_1817_8
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9826..10956)
DNA (1131bp) protein (377aa)
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
ribonucleotide-diphosphate reductase subunit beta (EC:1.17.4.1); K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
Ribonucleoside-diphosphate reductase subunit beta n=1 Tax=Afipia felis ATCC 53690 RepID=K8NK87_AFIFE
SCNpilot_cont_750_bf_scaffold_1817_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10981..12828)
DNA (1848bp) protein (616aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
nrdA; ribonucleoside-diphosphate reductase alpha subunit NrdA (EC:1.17.4.1); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Ribonucleoside-diphosphate reductase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJS3_9BRAD
SCNpilot_cont_750_bf_scaffold_1817_10
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12881..13798)
DNA (918bp) protein (306aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ribonucleotide-diphosphate reductase subunit alpha (EC:1.17.4.1); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
ribonucleoside-diphosphate reductase n=1 Tax=Afipia birgiae RepID=UPI0002E6279C
SCNpilot_cont_750_bf_scaffold_1817_11
unknown

Not on your lists

comp(14132..14581)
DNA (450bp) protein (150aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_1817_12

Not on your lists

14686..14859
DNA (174bp) protein (58aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium 888 RepID=B8R8N6_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:ACF98042.1}; TaxID=548896 species="Bacteria; environmental samples.;" source="uncultured bacterium 888.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_1817_13

Not on your lists

14872..15213
DNA (342bp) protein (114aa)
Heme/copper-type cytochrome/quinol oxidase, subunit 2; K02275 cytochrome c oxidase subunit II [EC:1.9.3.1]
Cytochrome c oxidase (B(O/a)3-type) chain II n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9QC57_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKN61729.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
Displaying 13 items

View Taxonomy