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SCNpilot_cont_750_bf_scaffold_459

Search features with annotation key words

Displaying items 1-30 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_459_1
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..142)
DNA (141bp) protein (47aa)
ureB; urease subunit beta (EC:3.5.1.5); K01429 urease subunit beta [EC:3.5.1.5]
urease subunit beta n=1 Tax=Ahrensia kielensis RepID=UPI000371A09C
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
SCNpilot_cont_750_bf_scaffold_459_2
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(145..726)
DNA (582bp) protein (194aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003615C99
HupE-UreJ family metal transporter; K03192 urease accessory protein
Protein hupE {ECO:0000313|EMBL:KFL29040.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
SCNpilot_cont_750_bf_scaffold_459_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(752..985)
DNA (234bp) protein (78aa)
Urease subunit gamma {ECO:0000256|HAMAP-Rule:MF_00739, ECO:0000256|RuleBase:RU003850}; EC=3.5.1.5 {ECO:0000256|HAMAP-Rule:MF_00739, ECO:0000256|RuleBase:RU003850};; Urea amidohydrolase subunit gamma {ECO:0000256|HAMAP-Rule:MF_00739}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
urease subunit gamma; K01430 urease subunit gamma [EC:3.5.1.5]
urease subunit gamma n=1 Tax=Aureimonas ureilytica RepID=UPI000362C4F8
SCNpilot_cont_750_bf_scaffold_459_4
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(995..1828)
DNA (834bp) protein (278aa)
Urease accessory protein UreD n=1 Tax=Rhizobium sp. IRBG74 RepID=U4PZZ0_9RHIZ
ureD; Urease accessory protein UreD
Urease accessory protein UreD {ECO:0000256|HAMAP-Rule:MF_01384, ECO:0000313|EMBL:CDI09372.1}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
SCNpilot_cont_750_bf_scaffold_459_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1927..2622)
DNA (696bp) protein (232aa)
Possible ATP-binding component of ABC transporter n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N3M8_RHOPA rbh
ABC transporter ATP-binding protein; K01996 branched-chain amino acid transport system ATP-binding protein rbh
Possible ATP-binding component of ABC transporter {ECO:0000313|EMBL:CAE29106.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
SCNpilot_cont_750_bf_scaffold_459_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2661..3422)
DNA (762bp) protein (254aa)
Urea ABC transporter, ATP-binding protein UrtD n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P039_9BRAD
Urea ABC transporter, ATP-binding protein UrtD {ECO:0000313|EMBL:EKS34114.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_750_bf_scaffold_459_7
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3427..4332)
DNA (906bp) protein (302aa)
amino acid ABC transporter permease n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI000349868F
Putative branched-chain amino acid ABC transporter (Permease protein) {ECO:0000313|EMBL:CCE02168.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
branched chain amino acid ABC transporter permease; K01998 branched-chain amino acid transport system permease protein
SCNpilot_cont_750_bf_scaffold_459_8
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4570..6207)
DNA (1638bp) protein (546aa)
urea ABC transporter permease n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036CF0CF rbh
ABC transporter permease; K01997 branched-chain amino acid transport system permease protein rbh
ABC transporter permease protein {ECO:0000313|EMBL:BAC46714.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
SCNpilot_cont_750_bf_scaffold_459_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6274..7608)
DNA (1335bp) protein (445aa)
branched-chain amino acid ABC transporter substrate-binding protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034A07DC
Branched-chain amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:KIZ45154.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
urea short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_cont_750_bf_scaffold_459_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7985..9025)
DNA (1041bp) protein (347aa)
Transcriptional regulator, AraC family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJK3_NITHX rbh
AraC family transcriptional regulator rbh
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ABE63594.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_459_11
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9126..9938
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJK2_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63595.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_459_12
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9962..10765
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJK1_NITHX rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABE63596.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_459_13
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10785..12050
DNA (1266bp) protein (422aa)
Twin-arginine translocation pathway signal n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJK0_NITHX
twin-arginine translocation pathway signal
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:ABE63597.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_459_14
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12047..13036
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJJ9_NITHX rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABE63598.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_459_15
unknown

Not on your lists

13055..13570
DNA (516bp) protein (172aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_459_16
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13576..15243
DNA (1668bp) protein (556aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJJ8_NITHX rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABE63599.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_459_17
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15264..15629
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QJJ7_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63600.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_459_18
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15717..16394)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5ETX7_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CCV03171.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
isoprenylcysteine carboxyl methyltransferase
SCNpilot_cont_750_bf_scaffold_459_19
unknown

Not on your lists

comp(16421..16627)
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_459_20
bacterium YEK0313, Bacteria

Not on your lists

comp(16624..17235)
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Deinococcus apachensis RepID=UPI0003811A8B
HTH-type transcriptional regulator RutR {ECO:0000313|EMBL:CEJ14710.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
TetR family transcriptional regulator
SCNpilot_cont_750_bf_scaffold_459_21
bacterium YEK0313, Bacteria

Not on your lists

17290..18246
DNA (957bp) protein (319aa)
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QP21_9BRAD
GDP-L-fucose synthase {ECO:0000313|EMBL:CEJ14711.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
NAD-dependent epimerase/dehydratase rbh
SCNpilot_cont_750_bf_scaffold_459_22
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18316..19125
DNA (810bp) protein (270aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:KGT77803.1}; EC=4.2.1.17 {ECO:0000313|EMBL:KGT77803.1};; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
enoyl-CoA hydratase n=1 Tax=Bradyrhizobium elkanii RepID=UPI000311F5AA
hypothetical protein
SCNpilot_cont_750_bf_scaffold_459_23
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19293..20555)
DNA (1263bp) protein (421aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H171_9BRAD
Bradyrhizobium elkanii strain UASWS1015 Contig166, whole genome shotgun sequence {ECO:0000313|EMBL:KIU51293.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
major facilitator superfamily (MFS) transporter
SCNpilot_cont_750_bf_scaffold_459_24
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20990..23233)
DNA (2244bp) protein (748aa)
Transcriptional regulator, CdaR n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ETI6_METSB rbh
Purine catabolism regulatory protein {ECO:0000313|EMBL:EWS66331.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
CdaR family transcriptional regulator rbh
SCNpilot_cont_750_bf_scaffold_459_25
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23322..24359)
DNA (1038bp) protein (346aa)
Zinc-binding dehydrogenase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SNX9_METPP rbh
zinc-binding dehydrogenase rbh
Zinc-binding dehydrogenase {ECO:0000313|EMBL:ABM97268.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
SCNpilot_cont_750_bf_scaffold_459_26
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24366..25646)
DNA (1281bp) protein (427aa)
Malate dehydrogenase {ECO:0000313|EMBL:EWS54008.1}; EC=1.1.1.37 {ECO:0000313|EMBL:EWS54008.1};; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
malate dehydrogenase (NAD) (EC:1.1.1.37); K00024 malate dehydrogenase [EC:1.1.1.37] rbh
Malate dehydrogenase (NAD) n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SNY0_METPP rbh
SCNpilot_cont_750_bf_scaffold_459_27
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25643..26263)
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SNY1_METPP rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABM97270.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
SCNpilot_cont_750_bf_scaffold_459_28
Methylibium sp. T29, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26268..27098)
DNA (831bp) protein (277aa)
Ethanolamine utilization protein EutJ n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SNY2_METPP
Ethanolamine utilization protein EutJ {ECO:0000313|EMBL:EWS54006.1}; TaxID=1430884 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29.;"
ethanolamine utilization protein EutJ; K04024 ethanolamine utilization protein EutJ
SCNpilot_cont_750_bf_scaffold_459_29
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27091..28497)
DNA (1407bp) protein (469aa)
ethanolamine utilization protein EutE (EC:1.2.1.10) rbh
Acetaldehyde dehydrogenase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SNY3_METPP rbh
Aldehyde-alcohol dehydrogenase {ECO:0000313|EMBL:EWS66423.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
SCNpilot_cont_750_bf_scaffold_459_30
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28544..28846)
DNA (303bp) protein (101aa)
Putative carboxysome structural-like protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SNY4_METPP
putative carboxysome structural-like protein; K04027 ethanolamine utilization protein EutM
Putative carboxysome structural-like protein {ECO:0000313|EMBL:ABM97273.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
Displaying items 1-30 of 63 in total

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