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SCNpilot_cont_750_bf_scaffold_551

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Displaying items 1-30 of 100 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_551_1
Litoreibacter arenae, Litoreibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..200
DNA (198bp) protein (66aa)
Cytochrome c oxidase (B(O/a)3-type) chain II {ECO:0000313|EMBL:EPX77163.1}; EC=1.9.3.1 {ECO:0000313|EMBL:EPX77163.1};; TaxID=1123360 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Litoreibacter.;" source="Litoreibacter arenae DSM 19593.;"
Heme/copper-type cytochrome/quinol oxidase, subunit 2; K02275 cytochrome c oxidase subunit II [EC:1.9.3.1]
Cytochrome c oxidase (B(O/a)3-type) chain II n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9QC57_9RHOB
SCNpilot_cont_750_bf_scaffold_551_2

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202..1398
DNA (1197bp) protein (399aa)
cytochrome-c oxidase (EC:1.9.3.1); K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
Cytochrome c oxidase (B(O/a)3-type) chain I n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9RTA5_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKN61728.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_cont_750_bf_scaffold_551_3

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1355..1852
DNA (498bp) protein (166aa)
Heme/copper-type cytochrome/quinol oxidase, subunit 1; K02274 cytochrome c oxidase subunit I [EC:1.9.3.1]
Cytochrome c oxidase (B(O/a)3-type) chain I n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9RTA5_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KKN61728.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_cont_750_bf_scaffold_551_4

Not on your lists

1879..3537
DNA (1659bp) protein (553aa)
protoheme IX farnesyltransferase; K02301 protoheme IX farnesyltransferase [EC:2.5.1.-]
Protoheme IX farnesyltransferase n=1 Tax=Thalassobacter arenae DSM 19593 RepID=S9RGG0_9RHOB rbh
Uncharacterized protein {ECO:0000313|EMBL:KKN61727.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
SCNpilot_cont_750_bf_scaffold_551_5
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3534..5093
DNA (1560bp) protein (520aa)
Cytochrome b/b6-like protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11MU7_MESSB rbh
cytochrome b/b6-like rbh
Cytochrome b/b6-like protein {ECO:0000313|EMBL:ABG61272.1}; Flags: Precursor;; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_cont_750_bf_scaffold_551_6
unknown

Not on your lists

5090..5299
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_551_7
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5238..5537
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RSD6_ACCPU
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
SCNpilot_cont_750_bf_scaffold_551_8
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5646..6440
DNA (795bp) protein (265aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003650936
Crp/Fnr family transcription regulator {ECO:0000313|EMBL:AHB48236.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
Crp/Fnr family transcriptional regulator
SCNpilot_cont_750_bf_scaffold_551_9
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6487..6870)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V3B8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG07056.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_551_10
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6912..8261)
DNA (1350bp) protein (450aa)
Coproporphyrinogen-III oxidase {ECO:0000256|PIRNR:PIRNR000167}; EC=1.3.99.22 {ECO:0000256|PIRNR:PIRNR000167};; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hemN; coproporphyrinogen III oxidase; K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22] rbh
coproporphyrinogen III oxidase n=1 Tax=Methylobacterium sp. MB200 RepID=UPI000346AD39 rbh
SCNpilot_cont_750_bf_scaffold_551_11
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8597..11353)
DNA (2757bp) protein (919aa)
membrane protein n=1 Tax=Afipia birgiae RepID=UPI000313E713 rbh
UPF0182 protein FG93_03148 {ECO:0000256|HAMAP-Rule:MF_01600}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein; K09118 hypothetical protein rbh
SCNpilot_cont_750_bf_scaffold_551_12
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11409..12839)
DNA (1431bp) protein (477aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
dihydrolipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4]
dihydrolipoamide dehydrogenase n=1 Tax=Hoeflea sp. 108 RepID=UPI00037EC218
SCNpilot_cont_750_bf_scaffold_551_13
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12843..14165)
DNA (1323bp) protein (441aa)
Branched-chain alpha-keto acid dehydrogenase subunit E2 n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YHS1_9RHIZ
Branched-chain alpha-keto acid dehydrogenase subunit E2 {ECO:0000313|EMBL:EHH07248.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase component
SCNpilot_cont_750_bf_scaffold_551_14
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14167..15180)
DNA (1014bp) protein (338aa)
transketolase; K00167 2-oxoisovalerate dehydrogenase E1 component, beta subunit [EC:1.2.4.4]
Transketolase central region n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TGW1_MESCW
Transketolase central region {ECO:0000313|EMBL:ADV10047.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
SCNpilot_cont_750_bf_scaffold_551_15
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15183..16415)
DNA (1233bp) protein (411aa)
bkdA1; 2-oxoisovalerate dehydrogenase subunit alpha (EC:1.2.4.4) rbh
2-oxoisovalerate dehydrogenase subunit alpha n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000379DD43
2-oxoisovalerate dehydrogenase {ECO:0000313|EMBL:KFG67014.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
SCNpilot_cont_750_bf_scaffold_551_16
Citreicella sp. SE45, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16628..17326)
DNA (699bp) protein (233aa)
Transcriptional regulator n=1 Tax=Citreicella sp. SE45 RepID=D0DBW8_9RHOB
Transcriptional regulator {ECO:0000313|EMBL:EEX12585.1}; TaxID=501479 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. SE45.;"
helix-turn-helix hxlr type
SCNpilot_cont_750_bf_scaffold_551_17
Hyphomonas sp. BRH_c22, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17435..18550
DNA (1116bp) protein (372aa)
acyl-CoA dehydrogenase n=1 Tax=Saccharopolyspora erythraea RepID=UPI0001D30DAD
Uncharacterized protein {ECO:0000313|EMBL:KJS36646.1}; TaxID=1629710 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. BRH_c22.;"
acyl-CoA dehydrogenase
SCNpilot_cont_750_bf_scaffold_551_18
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18603..19571)
DNA (969bp) protein (323aa)
Transcriptional regulator, putative n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MI38_RHISN
transcriptional regulator, putative
Transcriptional regulator, putative {ECO:0000313|EMBL:ACP24386.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_cont_750_bf_scaffold_551_19
GWC2_RIF_CHLX_73_18_curated, RIF-CHLX, Bacteria

Not on your lists

comp(19619..21265)
DNA (1647bp) protein (549aa)
long-chain-fatty-acid--CoA ligase; K00666 fatty-acyl-CoA synthase [EC:6.2.1.-]
AMP-dependent synthetase and ligase id=4570271 bin=GWC2_Chloroflexi_73_18 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
Tax=GWC2_RIF_CHLX_73_18_curated
SCNpilot_cont_750_bf_scaffold_551_20
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21262..22752)
DNA (1491bp) protein (497aa)
Putative indolepyruvate oxidoreductase subunit beta n=1 Tax=Variovorax paradoxus B4 RepID=T1XNB7_VARPD rbh
putative indolepyruvate oxidoreductase subunit beta rbh
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
SCNpilot_cont_750_bf_scaffold_551_21
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22764..24887)
DNA (2124bp) protein (708aa)
Indolepyruvate ferredoxin oxidoreductase, alpha subunit id=1275374 bin=GWE1_Burkholderiales_65_30 species=Bordetella holmesii genus=Bordetella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
putative indolepyruvate oxidoreductase subunit alpha
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
SCNpilot_cont_750_bf_scaffold_551_22
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24900..25280)
DNA (381bp) protein (127aa)
Predicted thioesterase n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P0H0_AROAE
Thioesterase {ECO:0000313|EMBL:BAO29411.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
thioesterase
SCNpilot_cont_750_bf_scaffold_551_23
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25636..27012
DNA (1377bp) protein (459aa)
Phenylacetyl-CoA dioxygenase n=1 Tax=Streptomyces griseoviridis RepID=R9UUB9_STRGD
Enoyl-CoA hydratase {ECO:0000313|EMBL:ETR75614.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
enoyl-CoA hydratase/isomerase
SCNpilot_cont_750_bf_scaffold_551_24

Not on your lists

27128..28303
DNA (1176bp) protein (392aa)
Putative branched-chain amino acid ABC transporter system LivK n=1 Tax=uncultured bacterium CBNPD1 BAC clone 67 RepID=B1N6E7_9BACT rbh
Putative branched-chain amino acid ABC transporter system LivK {ECO:0000313|EMBL:ABM53493.1}; TaxID=417306 species="Bacteria; environmental samples.;" source="uncultured bacterium CBNPD1 BAC clone 67.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein rbh
SCNpilot_cont_750_bf_scaffold_551_25

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28372..29247
DNA (876bp) protein (292aa)
Putative inner-membrane translocator LivH n=1 Tax=uncultured bacterium CBNPD1 BAC clone 67 RepID=B1N6E8_9BACT rbh
Putative inner-membrane translocator LivH {ECO:0000313|EMBL:ABM53494.1}; TaxID=417306 species="Bacteria; environmental samples.;" source="uncultured bacterium CBNPD1 BAC clone 67.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein rbh
SCNpilot_cont_750_bf_scaffold_551_26

Not on your lists

29251..30195
DNA (945bp) protein (315aa)
Putative permease protein LivM n=1 Tax=uncultured bacterium CBNPD1 BAC clone 67 RepID=B1N6E9_9BACT rbh
Putative permease protein LivM {ECO:0000313|EMBL:ABM53495.1}; TaxID=417306 species="Bacteria; environmental samples.;" source="uncultured bacterium CBNPD1 BAC clone 67.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein rbh
SCNpilot_cont_750_bf_scaffold_551_27
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30195..30977
DNA (783bp) protein (261aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Microvirga sp. WSM3557 RepID=I4YLM6_9RHIZ rbh
Leucine/isoleucine/valine transporter ATP-binding subunit {ECO:0000313|EMBL:KFG67000.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_750_bf_scaffold_551_28
Sulfitobacter pseudonitzschiae, Sulfitobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30916..31677
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PB03_9BRAD
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KEJ93897.1}; TaxID=1402135 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sulfitobacter.;" source="Sulfitobacter pseudonitzschiae.;"
livF; high-affinity branched-chain amino acid transport ATP-binding protein LivF
SCNpilot_cont_750_bf_scaffold_551_29
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31952..32998)
DNA (1047bp) protein (349aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PTM7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41708.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
transcriptional regulator
SCNpilot_cont_750_bf_scaffold_551_30
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33185..34408
DNA (1224bp) protein (408aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PLQ6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41709.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
putative ABC branched-chain amino transporter, periplasmic binding protein; K01999 branched-chain amino acid transport system substrate-binding protein rbh
Displaying items 1-30 of 100 in total

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