ggKbase home page

SCNpilot_cont_750_bf_scaffold_608

Search features with annotation key words

Displaying items 1-30 of 113 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_608_1
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..771
DNA (771bp) protein (257aa)
Putative transmembrane protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JJS7_OLICO
putative transmembrane protein
Putative transmembrane protein {ECO:0000313|EMBL:AEI05297.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_750_bf_scaffold_608_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

920..1732
DNA (813bp) protein (271aa)
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034999B3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAE30165.1}; Flags: Precursor;; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
SCNpilot_cont_750_bf_scaffold_608_3
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1741..2172)
DNA (432bp) protein (144aa)
Alkylated DNA repair protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H2M8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KJC57224.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_608_4
unknown

Not on your lists

2442..2609
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_608_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2721..5240
DNA (2520bp) protein (840aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
glycogen/starch/alpha-glucan phosphorylase; K00688 starch phosphorylase [EC:2.4.1.1] rbh
Phosphorylase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20WV3_RHOPB rbh
SCNpilot_cont_750_bf_scaffold_608_6
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5363..6208
DNA (846bp) protein (282aa)
oxidoreductase; K00100 [EC:1.1.1.-] rbh
aldo/keto reductase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037E441D rbh
Aldo/keto reductase, diketogulonate reductase {ECO:0000313|EMBL:EJN09919.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
SCNpilot_cont_750_bf_scaffold_608_7
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6296..7132
DNA (837bp) protein (279aa)
Multiple sugar transport system permease n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IJR8_9BRAD rbh
Multiple sugar transport system permease {ECO:0000313|EMBL:ERF84030.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
thioesterase rbh
SCNpilot_cont_750_bf_scaffold_608_8
Bradyrhizobium sp. ORS 285, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7327..8409)
DNA (1083bp) protein (361aa)
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=115808 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 285.;"
pckA; phosphoenolpyruvate carboxykinase; K01610 phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
Phosphoenolpyruvate carboxykinase [ATP] n=1 Tax=Bradyrhizobium sp. ORS 285 RepID=H0RVY3_9BRAD
SCNpilot_cont_750_bf_scaffold_608_9
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8376..8870)
DNA (495bp) protein (165aa)
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
pckA; phosphoenolpyruvate carboxykinase (EC:4.1.1.49); K01610 phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
phosphoenolpyruvate carboxykinase n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00036DAC19
SCNpilot_cont_750_bf_scaffold_608_10
unknown

Not on your lists

comp(8816..8992)
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_608_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9086..9835)
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PFV3_9BRAD
Pyridoxamine 5'-phosphate oxidase {ECO:0000313|EMBL:KIZ41277.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
pyridoxamine 5'-phosphate oxidase-like FMN-binding protein; K07226 hypothetical protein
SCNpilot_cont_750_bf_scaffold_608_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10071..10772
DNA (702bp) protein (234aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21BR4_RHOPB
Transcriptional regulator {ECO:0000313|EMBL:KIZ41276.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
two component transcriptional regulator; K14981 two-component system, OmpR family, response regulator ChvI
SCNpilot_cont_750_bf_scaffold_608_13
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10936..12747
DNA (1812bp) protein (604aa)
sensor signal transduction histidine kinase; K14980 two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Signal transduction histidine kinase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QR15_NITHX
SCNpilot_cont_750_bf_scaffold_608_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12744..13277
DNA (534bp) protein (178aa)
Putative HPr kinase/phosphorylase n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TCN0_9BRAD
Serine kinase {ECO:0000313|EMBL:KIZ41274.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_608_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13407..13808
DNA (402bp) protein (134aa)
PTS system fructose subfamily IIA component; K02793 PTS system, mannose-specific IIA component [EC:2.7.1.69]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P3Y3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS37237.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_cont_750_bf_scaffold_608_16
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13805..14149
DNA (345bp) protein (115aa)
HPrNtr n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QR18_NITHX
hypothetical protein; K11189 phosphocarrier protein
HPrNtr {ECO:0000313|EMBL:ABE61329.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_608_17
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14249..14704)
DNA (456bp) protein (152aa)
MaoC-like dehydratase n=1 Tax=Rhizobium sp. IRBG74 RepID=U4QF09_9RHIZ
MaoC-like dehydratase
MaoC-like dehydratase {ECO:0000313|EMBL:CDI12150.1}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
SCNpilot_cont_750_bf_scaffold_608_18
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14793..15986)
DNA (1194bp) protein (398aa)
racemase n=1 Tax=Bradyrhizobium japonicum RepID=UPI000372AC02 rbh
L-carnitine dehydratase/bile acid-inducible {ECO:0000313|EMBL:AHY48508.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
L-carnitine dehydratase/bile acid-inducible protein F rbh
SCNpilot_cont_750_bf_scaffold_608_19
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16247..17347
DNA (1101bp) protein (367aa)
LacI family transcription regulator (EC:5.1.1.1); K02529 LacI family transcriptional regulator rbh
transcriptional regulator n=1 Tax=Bradyrhizobium japonicum RepID=UPI000367F3BD rbh
LacI family transcriptional regulator {ECO:0000313|EMBL:KGT77957.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
SCNpilot_cont_750_bf_scaffold_608_20
Burkholderia sp. CCGE1002, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17334..18521)
DNA (1188bp) protein (396aa)
glycosyl hydrolase n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI0003609C54 rbh
glycosyl hydrolase family protein rbh
Glycosyl hydrolase family 88 {ECO:0000313|EMBL:ADG19651.1}; TaxID=640511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (strain CCGE1002).;"
SCNpilot_cont_750_bf_scaffold_608_21
R_Betaproteobacteria_68_150, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18646..19347)
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00037D88EA
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_68_150_curated
SCNpilot_cont_750_bf_scaffold_608_22
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19402..20559)
DNA (1158bp) protein (386aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037463E6
NADH:flavin oxidoreductase {ECO:0000313|EMBL:KJC59398.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
NADH:flavin oxidoreductase / NADH oxidase family protein
SCNpilot_cont_750_bf_scaffold_608_23
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20649..21551)
DNA (903bp) protein (301aa)
polysaccharide deacetylase n=1 Tax=Elioraea tepidiphila RepID=UPI000368C529
Polysaccharide deacetylase {ECO:0000313|EMBL:EKE76386.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
polysaccharide deacetylase
SCNpilot_cont_750_bf_scaffold_608_24
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21649..22539)
DNA (891bp) protein (297aa)
N-carbamoylsarcosine amidase protein n=1 Tax=alpha proteobacterium RS24 RepID=U2XWY7_9PROT
amidohydrolase; K07045
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_cont_750_bf_scaffold_608_25

Not on your lists

comp(22605..23780)
DNA (1176bp) protein (392aa)
acyl-CoA dehydrogenase n=1 Tax=Lentibacillus jeotgali RepID=UPI0002625CA1
Uncharacterized protein {ECO:0000313|EMBL:EKD36445.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
mmgC; acyl-CoA dehydrogenase
SCNpilot_cont_750_bf_scaffold_608_26
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23803..24573)
DNA (771bp) protein (257aa)
Nitrate/sulfonate/bicarbonate ABC transporter permease protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2XAI7_9MICO
Nitrate/sulfonate/bicarbonate ABC transporter permease protein {ECO:0000313|EMBL:GAD34611.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
transport system permease
SCNpilot_cont_750_bf_scaffold_608_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24633..25406)
DNA (774bp) protein (258aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component n=1 Tax=Variovorax sp. CF313 RepID=J2KT81_9BURK
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component {ECO:0000313|EMBL:EJL76228.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_cont_750_bf_scaffold_608_28
Saccharopolyspora rectivirgula, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25423..27558)
DNA (2136bp) protein (712aa)
CoA-binding domain protein n=1 Tax=Desulfotomaculum kuznetsovii (strain DSM 6115 / VKM B-1805 / 17) RepID=F6CI56_DESK7
Uncharacterized protein {ECO:0000313|EMBL:KEI45722.1}; TaxID=28042 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora rectivirgula.;"
CoA-binding domain-containing protein
SCNpilot_cont_750_bf_scaffold_608_29
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27604..28710)
DNA (1107bp) protein (369aa)
2-nitropropane dioxygenase n=1 Tax=Henriciella marina RepID=UPI000366AC4B
2-nitropropane dioxygenase NPD
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
SCNpilot_cont_750_bf_scaffold_608_30
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(28760..29857)
DNA (1098bp) protein (366aa)
Nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein n=1 Tax=Microbacterium sp. TS-1 RepID=U2YVH4_9MICO
hypothetical protein
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
Displaying items 1-30 of 113 in total

View Taxonomy