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SCNpilot_cont_750_bf_scaffold_684

Search features with annotation key words

Displaying items 1-30 of 58 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_684_1
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..128
DNA (126bp) protein (42aa)
flagellar L-ring protein FlgH n=1 Tax=Bradyrhizobium elkanii RepID=UPI00035F4551
Flagellar L-ring protein {ECO:0000256|HAMAP-Rule:MF_00415}; Basal body L-ring protein {ECO:0000256|HAMAP-Rule:MF_00415}; Flags: Precursor;; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
flgH; flagellar basal body L-ring protein; K02393 flagellar L-ring protein precursor FlgH
SCNpilot_cont_750_bf_scaffold_684_2
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

364..639
DNA (276bp) protein (92aa)
DNA repair protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI0003496876
ATP-dependent DNA ligase protein; K10979 DNA end-binding protein Ku
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
SCNpilot_cont_750_bf_scaffold_684_3
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

674..1231
DNA (558bp) protein (186aa)
Probable DNA repair protein BJ6T_19920 n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7D603_BRAJP
hypothetical protein; K10979 DNA end-binding protein Ku
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_cont_750_bf_scaffold_684_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1235..1519
DNA (285bp) protein (95aa)
MFS transporter, OFA family, oxalate/formate antiporter n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1ISZ4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KIZ45653.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_684_5
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1920..2285)
DNA (366bp) protein (122aa)
molecular chaperone DnaK n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002F3087B
RNA polymerase-binding transcription factor DksA {ECO:0000256|HAMAP-Rule:MF_00926}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
TraR/DksA family transcriptional regulator; K06204 DnaK suppressor protein
SCNpilot_cont_750_bf_scaffold_684_6
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2514..2924)
DNA (411bp) protein (137aa)
flagellar assembly protein FliX n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003719285
Putative Flagellar assembly protein {ECO:0000313|EMBL:KGJ66304.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
fliX; flagellar assembly regulator FliX
SCNpilot_cont_750_bf_scaffold_684_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3191..4339
DNA (1149bp) protein (383aa)
Flagellar P-ring protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07RF3_RHOP5 rbh
flgI; flagellar basal body P-ring protein; K02394 flagellar P-ring protein precursor FlgI rbh
Flagellar P-ring protein {ECO:0000256|HAMAP-Rule:MF_00416}; Basal body P-ring protein {ECO:0000256|HAMAP-Rule:MF_00416}; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_750_bf_scaffold_684_8
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4339..4671
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SC61_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCD91788.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
chemotactic signal-response protein CheL
SCNpilot_cont_750_bf_scaffold_684_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4685..5176
DNA (492bp) protein (164aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q218X9_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD87057.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_750_bf_scaffold_684_10
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5422..5787
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QNN3_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62164.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_684_11
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5932..6294)
DNA (363bp) protein (121aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JBG7_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI07297.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_750_bf_scaffold_684_12
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6318..6683)
DNA (366bp) protein (122aa)
Flagellar FlaF n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QNN5_NITHX
flaF; flagellar biosynthesis regulatory protein FlaF; K06602 flagellar protein FlaF
Flagellar FlaF {ECO:0000313|EMBL:ABE62162.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_684_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6945..7097)
DNA (153bp) protein (51aa)
Molybdopterin-guanine dinucleotide biosynthesis protein B n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H6Q8_9BRAD
hypothetical protein
Flagellin {ECO:0000313|EMBL:CEG07399.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
SCNpilot_cont_750_bf_scaffold_684_14
unknown

Not on your lists

7629..8048
DNA (420bp) protein (140aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_684_15
Capsella rubella, Capsella, Brassicales, rosids, Streptophyta, Viridiplantae

Not on your lists

comp(7879..8523)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Capsella rubella RepID=B2BXX3_9BRAS
Uncharacterized protein {ECO:0000313|EMBL:EOA26578.1}; TaxID=81985 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella.;" source="Capsella rubella.;"
SCNpilot_cont_750_bf_scaffold_684_16
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8733..9158
DNA (426bp) protein (142aa)
flagellar biosynthesis repressor FlbT n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002EA71E3
Bradyrhizobium elkanii strain UASWS1015 Contig179, whole genome shotgun sequence {ECO:0000313|EMBL:KIU47689.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
flbT; flagellar biosynthesis repressor FlbT; K06601 flagellar protein FlbT
SCNpilot_cont_750_bf_scaffold_684_17
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9392..11167)
DNA (1776bp) protein (592aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QNP0_NITHX
hypothetical protein
Flagellar protein {ECO:0000313|EMBL:KJC55635.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
SCNpilot_cont_750_bf_scaffold_684_18
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11175..13052)
DNA (1878bp) protein (626aa)
Flagellar hook-associated protein FlgK n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1ITR5_9BRAD
Flagellar basal body rod protein FlgC {ECO:0000313|EMBL:KJC42756.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
flgK; flagellar hook-associated protein FlgK; K02396 flagellar hook-associated protein 1 FlgK
SCNpilot_cont_750_bf_scaffold_684_19
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13247..15040)
DNA (1794bp) protein (598aa)
flagellar hook protein FlgE n=1 Tax=Bradyrhizobium elkanii RepID=UPI000376008A
Flagellar hook protein FlgE {ECO:0000313|EMBL:KJC55637.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
flgE; flagellar hook protein FlgE; K02390 flagellar hook protein FlgE
SCNpilot_cont_750_bf_scaffold_684_20
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15608..16108)
DNA (501bp) protein (167aa)
methionine sulfoxide reductase B (EC:1.8.4.11); K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
methionine sulfoxide reductase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036C8DAF
Methionine sulfoxide reductase {ECO:0000313|EMBL:KJC55638.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
SCNpilot_cont_750_bf_scaffold_684_21
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16262..17677)
DNA (1416bp) protein (472aa)
MFS transporter, DHA2 family, multidrug resistance protein B n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H8S7_9BRAD
MFS transporter, DHA2 family, multidrug resistance protein B {ECO:0000313|EMBL:ERF86242.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_684_22
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17808..18353
DNA (546bp) protein (182aa)
phosphohistidine phosphatase, SixA; K08296 phosphohistidine phosphatase [EC:3.1.3.-]
Phosphohistidine phosphatase SixA n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P5J3_9BRAD
Phosphohistidine phosphatase SixA {ECO:0000313|EMBL:EKS37832.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_cont_750_bf_scaffold_684_23
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18433..18858
DNA (426bp) protein (142aa)
universal stress protein UspA n=1 Tax=Bradyrhizobium japonicum RepID=UPI000368EC69
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EJZ31499.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
SCNpilot_cont_750_bf_scaffold_684_24
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18938..19558)
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PDD3_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36333.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_684_25
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19782..20219
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00036FC5C4
Uncharacterized protein {ECO:0000313|EMBL:KGT80055.1}; TaxID=375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_684_26
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20532..21566
DNA (1035bp) protein (345aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q219A5_RHOPB
hypothetical protein; K07027
Uncharacterized protein {ECO:0000313|EMBL:ABD87031.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_750_bf_scaffold_684_27
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21765..23762
DNA (1998bp) protein (666aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TN13_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE07851.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_684_28
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23767..24375)
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TN11_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE07849.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_684_29
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24697..25725)
DNA (1029bp) protein (343aa)
Ferredoxin--NADP reductase {ECO:0000256|HAMAP-Rule:MF_01685}; Short=FNR {ECO:0000256|HAMAP-Rule:MF_01685};; Short=Fd-NADP(+) reductase {ECO:0000256|HAMAP-Rule:MF_01685};; EC=1.18.1.2 {ECO:0000256|HAMAP-Rule:MF_01685};; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9]
Ferredoxin--NADP reductase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PAQ9_9BRAD rbh
SCNpilot_cont_750_bf_scaffold_684_30
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25913..26371
DNA (459bp) protein (153aa)
hypothetical protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
YbgC/YbaW family acyl-CoA thioester hydrolase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1ITT0_9BRAD
YbgC/YbaW family acyl-CoA thioester hydrolase {ECO:0000313|EMBL:ERF86259.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
Displaying items 1-30 of 58 in total

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