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SCNpilot_cont_750_bf_scaffold_756

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_756_1
unknown

Not on your lists

179..406
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_756_2
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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510..1790
DNA (1281bp) protein (427aa)
2-halobenzoate 1,2-dioxygenase large subunit family protein n=25 Tax=Bordetella pertussis RepID=V8U990_BORPT rbh
putative dioxygenase hydroxylase component rbh
Putative dioxygenase hydroxylase component {ECO:0000313|EMBL:CCJ63140.1}; TaxID=568706 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis (strain ATCC 9797 / DSM 5571 / NCTC 10739 /; 18323).;"
SCNpilot_cont_750_bf_scaffold_756_3
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1797..2333
DNA (537bp) protein (179aa)
SnoaL-like domain protein n=34 Tax=Bordetella RepID=V8U8K0_BORPT
dioxygenase component
Dioxygenase component {ECO:0000313|EMBL:AIW95655.1}; TaxID=743278 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis B1920.;"
SCNpilot_cont_750_bf_scaffold_756_4
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2350..3183
DNA (834bp) protein (278aa)
Enoyl-CoA hydratase/isomerase-like protein n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QHM9_BORBO rbh
enoyl-CoA hydratase/isomerase-like protein rbh
Enoyl-CoA hydratase/isomerase family protein {ECO:0000313|EMBL:KCV61151.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
SCNpilot_cont_750_bf_scaffold_756_5
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3199..3930
DNA (732bp) protein (244aa)
Putative 3-oxoacyl-CoA or-ACP reductase n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QIM3_BORBO rbh
3-oxoacyl-ACP reductase rbh
Putative acetoacetyl-CoA reductase {ECO:0000313|EMBL:KCV61079.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
SCNpilot_cont_750_bf_scaffold_756_6
bacterium YEK0313, Bacteria

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comp(4086..5000)
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00030E706C
Monoterpene epsilon-lactone hydrolase {ECO:0000313|EMBL:CEJ14780.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
esterase
SCNpilot_cont_750_bf_scaffold_756_7
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5090..6292
DNA (1203bp) protein (401aa)
Putative oxidoreductase n=1 Tax=Bordetella bronchiseptica D445 RepID=K4TVV0_BORBO rbh
oxidoreductase rbh
Putative oxidoreductase {ECO:0000313|EMBL:CCJ63015.1}; TaxID=568706 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis (strain ATCC 9797 / DSM 5571 / NCTC 10739 /; 18323).;"
SCNpilot_cont_750_bf_scaffold_756_8
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6251..6907)
DNA (657bp) protein (219aa)
Putative TetR-family transcriptional regulator n=1 Tax=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) RepID=Q7W6R8_BORPA
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ETH90140.1}; TaxID=1331279 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis STO1-CHOC-0019.;"
SCNpilot_cont_750_bf_scaffold_756_9
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6984..8306)
DNA (1323bp) protein (441aa)
Putative acyl-CoA ligase n=1 Tax=Bordetella bronchiseptica (strain MO149) RepID=K0MVD1_BORBM rbh
acyl-CoA ligase rbh
Putative acyl-CoA ligase {ECO:0000313|EMBL:CAE42376.1}; TaxID=257313 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251).;"
SCNpilot_cont_750_bf_scaffold_756_10
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8513..9670
DNA (1158bp) protein (386aa)
Extracellular ligand-binding receptor n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AP26_DELSC
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
Extracellular ligand-binding receptor {ECO:0000313|EMBL:AEF87556.1}; Flags: Precursor;; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
SCNpilot_cont_750_bf_scaffold_756_11
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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9737..10771
DNA (1035bp) protein (345aa)
Putative amino acid uptake ABC transporter, permease protein n=2 Tax=Burkholderia multivorans RepID=B9BZF4_9BURK
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
SCNpilot_cont_750_bf_scaffold_756_12
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10768..12537
DNA (1770bp) protein (590aa)
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family / amino acid/amide ABC transporter membrane protein 1, HAAT family / amino acid/amide ABC transporter membrane protein 2, HAAT family n=1 Tax=Dechloromonas aromatica (strain RCB) RepID=Q478A7_DECAR
inner-membrane translocator:ABC transporter related
Tax=GWA2_Rhodocyclales_65_20_curated
SCNpilot_cont_750_bf_scaffold_756_13
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12534..13316
DNA (783bp) protein (261aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Acidovorax sp. CF316 RepID=J1EMT2_9BURK
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:EJE53561.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_750_bf_scaffold_756_14
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13328..14710
DNA (1383bp) protein (461aa)
D-lactate dehydrogenase {ECO:0000313|EMBL:CDW92599.1}; EC=1.1.2.4 {ECO:0000313|EMBL:CDW92599.1};; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
putative glycolate oxidase subunit GlcD; K00102 D-lactate dehydrogenase (cytochrome) [EC:1.1.2.4] rbh
Oxidoreductase, FAD-binding n=6 Tax=Burkholderia pseudomallei RepID=A3P661_BURP0 rbh
SCNpilot_cont_750_bf_scaffold_756_15
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14801..18289
DNA (3489bp) protein (1163aa)
Putative pyruvate ferredoxin/flavodoxin oxidoreductase n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QRA3_BORBO rbh
pyruvate ferredoxin/flavodoxin oxidoreductase rbh
Putative pyruvate ferredoxin/flavodoxin oxidoreductase {ECO:0000313|EMBL:CCN24930.1}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 1289.;"
SCNpilot_cont_750_bf_scaffold_756_16
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18289..18639
DNA (351bp) protein (117aa)
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
SCNpilot_cont_750_bf_scaffold_756_17
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18820..19233)
DNA (414bp) protein (138aa)
MaoC domain protein dehydratase n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T6G7_CAUSK
dehydratase
MaoC domain protein dehydratase {ECO:0000313|EMBL:ABZ69584.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_750_bf_scaffold_756_18
Rhodococcus erythropolis, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19230..19691)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Rhodococcus erythropolis (strain PR4 / NBRC 100887) RepID=C0ZPC7_RHOE4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAH35623.1}; TaxID=234621 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus erythropolis (strain PR4 / NBRC 100887).;"
SCNpilot_cont_750_bf_scaffold_756_19
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19692..20801)
DNA (1110bp) protein (370aa)
Acyl-CoA transferase n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QJK9_RALPI
Acyl-CoA transferase {ECO:0000313|EMBL:AGW90288.1}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
L-carnitine dehydratase/bile acid-inducible protein F
SCNpilot_cont_750_bf_scaffold_756_20
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21011..21778
DNA (768bp) protein (256aa)
Putative acetoacetyl-CoA reductase n=3 Tax=Bordetella bronchiseptica RepID=K0N1H2_BORBM
acetoacetyl-CoA reductase
Putative 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase {ECO:0000313|EMBL:KDD55626.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica OSU553.;"
SCNpilot_cont_750_bf_scaffold_756_21
Paracoccus sphaerophysae, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22029..22823
DNA (795bp) protein (265aa)
Putative branched-chain amino acid transport system ATP-binding protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AYM3_AZOBR
Amino acid ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGJ09515.1}; TaxID=690417 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sphaerophysae.;"
putative branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_750_bf_scaffold_756_22
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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22820..23527
DNA (708bp) protein (236aa)
Leucine/isoleucine/valine transporter subunit ATP-binding component of ABC superfamily n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EVN1_9RHIZ
Leucine/isoleucine/valine transporter subunit ATP-binding component of ABC superfamily {ECO:0000313|EMBL:CCV08065.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_750_bf_scaffold_756_23
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

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23543..25189
DNA (1647bp) protein (549aa)
Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1) n=1 Tax=Achromobacter xylosoxidans NH44784-1996 RepID=R4XI13_ALCXX rbh
Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1 rbh
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
Displaying 23 items

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