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SCNpilot_cont_750_bf_scaffold_869

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_869_1
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..211)
DNA (210bp) protein (70aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
purC; phosphoribosylaminoimidazole-succinocarboxamide synthase PurC (EC:6.3.2.6); K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6]
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=2 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3ST26_NITWN
SCNpilot_cont_750_bf_scaffold_869_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

259..801
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002FB01C7
Uncharacterized protein {ECO:0000313|EMBL:EKS36235.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
HpcH/HpaI aldolase
SCNpilot_cont_750_bf_scaffold_869_3
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1021..1686
DNA (666bp) protein (222aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=F8BKC4_OLICM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI07235.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_750_bf_scaffold_869_4
R_Sphingopyxis_65_20, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1823..2710
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 RepID=V5Q6L8_ZYMMB rbh
hypothetical protein rbh
Tax=RIFCSPHIGHO2_01_FULL_Sphingopyxis_65_20_curated
SCNpilot_cont_750_bf_scaffold_869_5
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2720..3652
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NMD3_RHISP rbh
hypothetical protein rbh
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
SCNpilot_cont_750_bf_scaffold_869_6
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3656..4678
DNA (1023bp) protein (341aa)
RES domain protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V1I5_9BRAD rbh
RES domain protein {ECO:0000313|EMBL:EFI53565.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
RES domain-containing protein rbh
SCNpilot_cont_750_bf_scaffold_869_7
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4806..5918)
DNA (1113bp) protein (371aa)
RNA methyl transferase TrmH; K02533 tRNA/rRNA methyltransferase [EC:2.1.1.-]
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256|RuleBase:RU362024}; tRNA Cm32/Um32 methyltransferase {ECO:0000256|RuleBase:RU362024}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
RNA methyltransferase TrmH, group 1 n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WVL0_9BRAD
SCNpilot_cont_750_bf_scaffold_869_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6252..7469
DNA (1218bp) protein (406aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108};; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
icd; isocitrate dehydrogenase (EC:1.1.1.42); K00031 isocitrate dehydrogenase [EC:1.1.1.42] rbh
Isocitrate dehydrogenase [NADP] n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EMK4_BRASB rbh
SCNpilot_cont_750_bf_scaffold_869_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7565..8002
DNA (438bp) protein (146aa)
YbgC/YbaW family acyl-CoA thioester hydrolase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P457_9BRAD
YbgC/YbaW family acyl-CoA thioester hydrolase {ECO:0000313|EMBL:EKS36241.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ybgC; Acyl-CoA thioester hydrolase ybgC
SCNpilot_cont_750_bf_scaffold_869_10
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8003..9766)
DNA (1764bp) protein (588aa)
Monovalent cation:proton antiporter-2 (CPA2) family transporter n=1 Tax=Afipia felis ATCC 53690 RepID=K8NN04_AFIFE rbh
Monovalent cation:proton antiporter-2 (CPA2) family transporter {ECO:0000313|EMBL:EKS27608.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
cation:proton antiport protein; K03455 monovalent cation:H+ antiporter-2, CPA2 family rbh
SCNpilot_cont_750_bf_scaffold_869_11
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10056..10883
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002E6B2A7
UspA domain protein {ECO:0000313|EMBL:EFI52659.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_869_12
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10986..13670)
DNA (2685bp) protein (895aa)
alaS; alanyl-tRNA synthetase (EC:6.1.1.7); K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
Alanine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00036}; EC=6.1.1.7 {ECO:0000255|HAMAP-Rule:MF_00036};; Alanyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00036}; Short=AlaRS {ECO:0000255|HAMAP-Rule:MF_00036};; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
Alanine--tRNA ligase n=2 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=SYA_NITHX
SCNpilot_cont_750_bf_scaffold_869_13
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14118..15269
DNA (1152bp) protein (384aa)
Aminomethyltransferase {ECO:0000256|RuleBase:RU003981}; EC=2.1.2.10 {ECO:0000256|RuleBase:RU003981};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
gcvT; glycine cleavage system aminomethyltransferase T; K00605 aminomethyltransferase [EC:2.1.2.10]
Aminomethyltransferase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QPK4_9BRAD rbh
SCNpilot_cont_750_bf_scaffold_869_14
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15279..15644
DNA (366bp) protein (122aa)
glycine cleavage system protein H n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002DC78E4
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
gcvH; glycine cleavage system protein H; K02437 glycine cleavage system H protein
SCNpilot_cont_750_bf_scaffold_869_15
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15652..18534
DNA (2883bp) protein (961aa)
Glycine dehydrogenase (decarboxylating) {ECO:0000256|HAMAP-Rule:MF_00711}; EC=1.4.4.2 {ECO:0000256|HAMAP-Rule:MF_00711};; Glycine cleavage system P-protein {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine decarboxylase {ECO:0000256|HAMAP-Rule:MF_00711}; Glycine dehydrogenase (aminomethyl-transferring) {ECO:0000256|HAMAP-Rule:MF_00711}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
gcvP; glycine dehydrogenase; K00281 glycine dehydrogenase [EC:1.4.4.2]
Glycine dehydrogenase (decarboxylating) n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H8J8_9BRAD
SCNpilot_cont_750_bf_scaffold_869_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(18896..19984)
DNA (1089bp) protein (363aa)
Protein RecA n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VIB0_RHOPX rbh
recA protein; K03553 recombination protein RecA rbh
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_cont_750_bf_scaffold_869_17
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20379..21200)
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZNA8_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM87705.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_cont_750_bf_scaffold_869_18

Not on your lists

21737..22306
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WVJ6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:AIA13838.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_cont_750_bf_scaffold_869_19
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22299..22568
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SGR8_9BRAD
signal peptide
Uncharacterized protein {ECO:0000313|EMBL:CCD93395.1}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
SCNpilot_cont_750_bf_scaffold_869_20
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22561..22944)
DNA (384bp) protein (128aa)
Putative fluoride ion transporter CrcB n=2 Tax=Oligotropha carboxidovorans RepID=F8BKD8_OLICM
crcB1; camphor resistance protein CrcB; K06199 CrcB protein
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
SCNpilot_cont_750_bf_scaffold_869_21
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23297..23575)
DNA (279bp) protein (93aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q218T1_RHOPB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD87105.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_750_bf_scaffold_869_22
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23963..24427
DNA (465bp) protein (155aa)
Thioesterase superfamily n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13AD2_RHOPS
thioesterase superfamily protein
Thioesterase superfamily {ECO:0000313|EMBL:ABE38957.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_750_bf_scaffold_869_23
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25219..25674)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z8A0_9BRAD
Aldehyde-activating protein {ECO:0000313|EMBL:KGM31635.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_869_24
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25744..26925)
DNA (1182bp) protein (394aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
ATP-dependent protease La; K01338 ATP-dependent Lon protease [EC:3.4.21.53]
Lon protease n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q215J0_RHOPB
Displaying 24 items

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