ggKbase home page

SCNpilot_cont_750_bf_scaffold_974

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_974_1
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..822)
DNA (822bp) protein (274aa)
Sulfide-quinone oxidoreductase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11FZ7_MESSB
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:KGD96967.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
sulfide-quinone reductase
SCNpilot_cont_750_bf_scaffold_974_2
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

931..1242
DNA (312bp) protein (104aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00036B436C
ArsR family transcriptional regulator {ECO:0000313|EMBL:EZQ13527.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
ArsR family transcriptional regulator
SCNpilot_cont_750_bf_scaffold_974_3
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1446..1811)
DNA (366bp) protein (122aa)
SnoaL-like polyketide cyclase n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QLT1_9BRAD
SnoaL-like polyketide cyclase {ECO:0000313|EMBL:EIG60737.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_974_4
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1995..3653)
DNA (1659bp) protein (553aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HGX7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF83706.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein; K07077
SCNpilot_cont_750_bf_scaffold_974_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3908..4366
DNA (459bp) protein (153aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13CF5_RHOPS
Signal peptide protein {ECO:0000313|EMBL:KIZ43810.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_974_6
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4563..5156
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HFY5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF83703.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
electron transport protein SCO1/SenC; K07152 rbh
SCNpilot_cont_750_bf_scaffold_974_7
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5147..7240)
DNA (2094bp) protein (698aa)
glycosyl transferase family 2 n=1 Tax=Afipia birgiae RepID=UPI00036BD466
Putative glycosyl transferase {ECO:0000313|EMBL:EGP09120.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
glycosyl transferase
SCNpilot_cont_750_bf_scaffold_974_8
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7369..8244
DNA (876bp) protein (292aa)
Amino acid ABC transporter substrate-binding protein, PAAT family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRP5_NITHX
extracellular solute-binding protein
Amino acid ABC transporter substrate-binding protein, PAAT family {ECO:0000313|EMBL:ABE61102.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_974_9
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9209..9871
DNA (663bp) protein (221aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00177}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00177};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00177}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
lysyl-tRNA synthetase (EC:6.1.1.6); K04566 lysyl-tRNA synthetase, class I [EC:6.1.1.6]
Lysine--tRNA ligase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QIN2_9BRAD
SCNpilot_cont_750_bf_scaffold_974_10
Jeotgalibacillus alimentarius, Jeotgalibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9923..10507)
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Lysinibacillus boronitolerans RepID=UPI0003083F29
Uncharacterized protein {ECO:0000313|EMBL:KIL53443.1}; TaxID=135826 species="Bacteria; Firmicutes; Bacilli; Bacillales; Planococcaceae; Jeotgalibacillus.;" source="Jeotgalibacillus alimentarius.;"
SCNpilot_cont_750_bf_scaffold_974_11
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10539..11165)
DNA (627bp) protein (209aa)
Peptidase S24 n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WRC3_9BRAD
Peptidase S24 {ECO:0000313|EMBL:EAQ37462.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
peptidase S24
SCNpilot_cont_750_bf_scaffold_974_12
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11393..11737
DNA (345bp) protein (115aa)
glutathione S-transferase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00037A88E8
Biopolymer transporter ExbD {ECO:0000313|EMBL:ERF83698.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_974_13
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11734..12828
DNA (1095bp) protein (365aa)
Dihydroorotate dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821}; EC=1.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00225, ECO:0000256|SAAS:SAAS00084821};; DHOdehase {ECO:0000256|HAMAP-Rule:MF_00225}; Dihydroorotate dehydrogenase (quinone); Dihydroorotate oxidase {ECO:0000256|HAMAP-Rule:MF_00225}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
pyrD; dihydroorotate dehydrogenase; K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1]
diguanylate cyclase n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002FB6271
SCNpilot_cont_750_bf_scaffold_974_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12885..14216)
DNA (1332bp) protein (444aa)
MATE efflux family protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21BB2_RHOPB
MATE efflux family protein; K03327 multidrug resistance protein, MATE family
MATE efflux family protein {ECO:0000313|EMBL:ABD86324.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_750_bf_scaffold_974_15
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14233..14535)
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037566D8
Uncharacterized protein {ECO:0000313|EMBL:KIZ39495.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_974_16
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14876..16570)
DNA (1695bp) protein (565aa)
ATP-dependent DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1] rbh
ATP-dependent DNA ligase n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00037125AC rbh
ATP dependent DNA ligase {ECO:0000313|EMBL:ABE61443.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_974_17
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16567..17613)
DNA (1047bp) protein (349aa)
Putative exonuclease of the beta-lactamase fold involved in RNA processing n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QLU8_9BRAD rbh
Putative exonuclease of the beta-lactamase fold involved in RNA processing {ECO:0000313|EMBL:EIG60754.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
putative mRNA 3-end processing factor; K07577 putative mRNA 3-end processing factor rbh
SCNpilot_cont_750_bf_scaffold_974_18
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17956..19326)
DNA (1371bp) protein (457aa)
Putative outer membrane protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21BB7_RHOPB
outer membrane protein
Possible outer membrane protein {ECO:0000313|EMBL:EAQ36972.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_750_bf_scaffold_974_19
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19687..22488
DNA (2802bp) protein (934aa)
DEAD/DEAH box helicase; K03724 ATP-dependent helicase Lhr and Lhr-like helicase [EC:3.6.4.-]
DEAD/DEAH box helicase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IR64_RHOP2
DEAD/DEAH box helicase {ECO:0000313|EMBL:ABD09296.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_750_bf_scaffold_974_20
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22540..23271
DNA (732bp) protein (244aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QIP4_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EGP09135.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
metallophosphoesterase; K06953 rbh
SCNpilot_cont_750_bf_scaffold_974_21
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23274..24137)
DNA (864bp) protein (288aa)
Transcriptional regulator, LysR family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QRK5_NITHX
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABE61142.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_974_22
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24232..25155
DNA (924bp) protein (308aa)
MFS transporter, metabolite:H+ symporter n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HGW0_9BRAD rbh
Multidrug DMT transporter permease {ECO:0000313|EMBL:KJC33629.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_974_23
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25254..26555
DNA (1302bp) protein (434aa)
Putative manganese transp n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6NBL7_RHOPA rbh
manganese transp rbh
Putative manganese transp {ECO:0000313|EMBL:CAE26255.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
SCNpilot_cont_750_bf_scaffold_974_24
unknown

Not on your lists

comp(26660..26740)
DNA (81bp) protein (27aa)

This feature has no annotations

Displaying 24 items

View Taxonomy