ggKbase home page

SCNpilot_cont_750_bf_scaffold_12466

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_12466_1
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..273)
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI00037F26E3
Sphingomonas taxi strain 30a NODE_65, whole genome shotgun sequence {ECO:0000313|EMBL:KIU30409.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
SCNpilot_cont_750_bf_scaffold_12466_2
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(270..536)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Pseudomonas aeruginosa VRFPA05 RepID=V4V7D7_PSEAI
Uncharacterized protein {ECO:0000313|EMBL:EQL41806.1}; TaxID=1350465 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa VRFPA03.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_12466_3
Sphingobium lactosutens, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(533..835)
DNA (303bp) protein (101aa)
Uncharacterized protein n=2 Tax=Sphingobium RepID=T0H6J5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB12965.1}; TaxID=1331060 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lactosutens DS20.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_12466_4
Novosphingobium sp. MBES04, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(896..1834)
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI0003602A79 rbh
Antirestriction protein {ECO:0000313|EMBL:GAM07449.1}; TaxID=1206458 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MBES04.;"
antirestriction protein rbh
SCNpilot_cont_750_bf_scaffold_12466_5
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2158..3405
DNA (1248bp) protein (416aa)
DNA polymerase IV {ECO:0000313|EMBL:GAO52902.1}; EC=2.7.7.7 {ECO:0000313|EMBL:GAO52902.1};; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
DNA-directed DNA polymerase; K02346 DNA polymerase IV [EC:2.7.7.7] rbh
type VI secretion protein ImpB n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI0002F2C025
SCNpilot_cont_750_bf_scaffold_12466_6
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3402..3653
DNA (252bp) protein (84aa)
Putative uncharacterized protein n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z8R6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EGD59341.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_12466_7
Sphingobium yanoikuyae, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3650..3826)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9D065_SPHYA
XRE family transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:EKU72352.1}; TaxID=883163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium yanoikuyae ATCC 51230.;"
SCNpilot_cont_750_bf_scaffold_12466_8
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4514..4801
DNA (288bp) protein (96aa)
Putative uncharacterized protein n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILC7_9SPHN
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK65190.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
SCNpilot_cont_750_bf_scaffold_12466_9
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4894..5235
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI000373F04A
Sphingomonas taxi strain 30a NODE_13, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28259.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_12466_10
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5587..5910)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J280_9SPHN
Single-stranded DNA-binding protein {ECO:0000256|PIRNR:PIRNR002070}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
single-stranded DNA-binding protein
SCNpilot_cont_750_bf_scaffold_12466_11
unknown

Not on your lists

comp(5966..6586)
DNA (621bp) protein (207aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_12466_12
Novosphingobium lindaniclasticum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6604..7446)
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Novosphingobium lindaniclasticum LE124 RepID=T0J0V9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB17760.1}; TaxID=1096930 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium lindaniclasticum LE124.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_12466_13
BJP_08E140C01_10KDA_Sphingomonadales_62_47, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7606..7908
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0003645677
hypothetical protein
Tax=BJP_08E140C01_10KDA_Sphingomonadales_62_47
SCNpilot_cont_750_bf_scaffold_12466_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7912..8739)
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI000304793B rbh
RepA family protein {ECO:0000313|EMBL:AJP74815.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_12466_15
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9344..10609)
DNA (1266bp) protein (422aa)
replication protein C n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CD835 rbh
Replication protein C {ECO:0000313|EMBL:KKC24076.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
replication protein C
SCNpilot_cont_750_bf_scaffold_12466_16
unknown

Not on your lists

comp(10772..11098)
DNA (327bp) protein (109aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_12466_17
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11287..11520)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IBX8_9SPHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCA89803.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
SCNpilot_cont_750_bf_scaffold_12466_18
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11810..12067
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI000366C607
XRE family transcriptional regulator
Xre-family transcriptional regulator {ECO:0000313|EMBL:BAI99208.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
SCNpilot_cont_750_bf_scaffold_12466_19
unknown

Not on your lists

12145..12381
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_12466_20
Novosphingobium sp. PP1Y, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12359..12826)
DNA (468bp) protein (156aa)
DNA resolvase n=1 Tax=Novosphingobium sp. PP1Y RepID=F6IBX3_9SPHN
DNA resolvase
DNA resolvase {ECO:0000313|EMBL:CCA89798.1}; TaxID=702113 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. PP1Y.;"
Displaying 20 items

View Taxonomy