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SCNpilot_cont_750_bf_scaffold_2457

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_2457_1
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..330
DNA (330bp) protein (110aa)
Enoyl-CoA hydratase/isomerase family protein 26 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HMI4_ACHXA
enoyl-CoA hydratase
Enoyl-CoA hydratase/isomerase family protein 26 {ECO:0000313|EMBL:ADP18211.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
SCNpilot_cont_750_bf_scaffold_2457_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(535..1104)
DNA (570bp) protein (190aa)
Regulatory protein IclR n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TQB0_ALIDB
regulatory protein iclr
Regulatory protein IclR {ECO:0000313|EMBL:ADV00152.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_cont_750_bf_scaffold_2457_3
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1101..2024)
DNA (924bp) protein (308aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036285C9
LysR family transcriptional regulator
Transcriptional regulator, LysR-family {ECO:0000313|EMBL:CAJ95286.1}; TaxID=381666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337); (Ralstonia eutropha).;"
SCNpilot_cont_750_bf_scaffold_2457_4
unknown

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comp(2272..2976)
DNA (705bp) protein (235aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_2457_5
Ralstonia sp. GA3-3, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3342..3644
DNA (303bp) protein (101aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037C7803
membrane-associated protein
Membrane-associated protein {ECO:0000313|EMBL:EON18127.1}; TaxID=1229514 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. GA3-3.;"
SCNpilot_cont_750_bf_scaffold_2457_6
Cupriavidus sp. SK-4, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3668..4837
DNA (1170bp) protein (390aa)
aminoacylase (EC:3.5.1.14); K01436 amidohydrolase [EC:3.5.1.-] rbh
amidohydrolase n=1 Tax=Variovorax paradoxus RepID=UPI00035DA30C
Peptidase M20 {ECO:0000313|EMBL:EYS85126.1}; TaxID=574750 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-4.;"
SCNpilot_cont_750_bf_scaffold_2457_7
Cupriavidus sp. HPC(L), Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4837..6228
DNA (1392bp) protein (464aa)
L-serine ammonia-lyase (EC:4.3.1.17); K01752 L-serine dehydratase [EC:4.3.1.17]
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035D0876 rbh
Serine dehydratase {ECO:0000313|EMBL:ESH91249.1}; TaxID=1217418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HPC(L).;"
SCNpilot_cont_750_bf_scaffold_2457_8
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6441..7703
DNA (1263bp) protein (421aa)
Putative Threonine ammonia-lyase n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TQJ7_9BRAD
Threonine dehydratase {ECO:0000313|EMBL:KJC51580.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
putative threonine ammonia-lyase
SCNpilot_cont_750_bf_scaffold_2457_9
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7716..8054)
DNA (339bp) protein (113aa)
HPrNtr n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QR18_NITHX
hypothetical protein; K11189 phosphocarrier protein
HPrNtr {ECO:0000313|EMBL:ABE61329.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_2457_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8051..8452)
DNA (402bp) protein (134aa)
PTS system fructose subfamily IIA component; K02793 PTS system, mannose-specific IIA component [EC:2.7.1.69]
PTS system fructose subfamily IIA component n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21BR7_RHOPB
PTS fructose transporter subunit IIA {ECO:0000313|EMBL:KIZ41273.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_750_bf_scaffold_2457_11
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8582..9139)
DNA (558bp) protein (186aa)
Putative HPr kinase/phosphorylase {ECO:0000313|EMBL:CCE04218.1}; EC=2.7.1.- {ECO:0000313|EMBL:CCE04218.1};; EC=2.7.4.- {ECO:0000313|EMBL:CCE04218.1};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
Putative HPr kinase/phosphorylase n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TCN0_9BRAD
hypothetical protein
SCNpilot_cont_750_bf_scaffold_2457_12
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9136..10992)
DNA (1857bp) protein (619aa)
sensor signal transduction histidine kinase; K14980 two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
Periplasmic sensor signal transduction histidine kinase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07TF6_RHOP5
SCNpilot_cont_750_bf_scaffold_2457_13
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11142..11723)
DNA (582bp) protein (194aa)
Two component transcriptional regulator, winged helix family n=2 Tax=Rhodopseudomonas palustris RepID=Q13E84_RHOPS
two component transcriptional regulator; K14981 two-component system, OmpR family, response regulator ChvI
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABD05174.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_750_bf_scaffold_2457_14
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11973..12716
DNA (744bp) protein (248aa)
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WS29_9BRAD
pyridoxamine 5'-phosphate oxidase-like FMN-binding protein; K07226 hypothetical protein
Pyridoxamine 5'-phosphate oxidase-related, FMN-binding {ECO:0000313|EMBL:EAQ37210.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_cont_750_bf_scaffold_2457_15
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12910..13716
DNA (807bp) protein (269aa)
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
pckA; phosphoenolpyruvate carboxykinase (EC:4.1.1.49); K01610 phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
Phosphoenolpyruvate carboxykinase [ATP] n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YCB4_9BRAD
SCNpilot_cont_750_bf_scaffold_2457_16
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13736..14434
DNA (699bp) protein (233aa)
pckA; phosphoenolpyruvate carboxykinase; K01610 phosphoenolpyruvate carboxykinase (ATP) [EC:4.1.1.49]
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
Phosphoenolpyruvate carboxykinase [ATP] n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0FZP7_9BRAD
SCNpilot_cont_750_bf_scaffold_2457_17
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14641..15423)
DNA (783bp) protein (261aa)
acyl-CoA thioesterase n=1 Tax=Bradyrhizobium elkanii RepID=UPI000369F798
Acyl-CoA thioesterase {ECO:0000313|EMBL:KJC39396.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_2457_18
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15605..16423)
DNA (819bp) protein (273aa)
2,5-diketo-D-gluconate reductase B; K06222 2,5-diketo-D-gluconate reductase B [EC:1.1.1.274]
2,5-diketo-D-gluconate reductase B n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HH22_9BRAD
2,5-diketo-D-gluconate reductase B {ECO:0000313|EMBL:ERF83761.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
SCNpilot_cont_750_bf_scaffold_2457_19
unknown

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16787..16957
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_2457_20
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

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17646..19001
DNA (1356bp) protein (452aa)
hypothetical protein id=2306561 bin=GWA2_Methylomirabilis_73_35 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
SCNpilot_cont_750_bf_scaffold_2457_21
unknown

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comp(18992..19231)
DNA (240bp) protein (80aa)

This feature has no annotations

Displaying 21 items

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