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SCNpilot_cont_750_bf_scaffold_2526

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_2526_1
unknown

Not on your lists

3..161
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_2526_2
Chryseobacterium piperi, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

254..1006
DNA (753bp) protein (251aa)
Putative integral membrane transmembrane protein n=1 Tax=Ralstonia solanacearum CMR15 RepID=D8NEF8_RALSL
Membrane protein {ECO:0000313|EMBL:KFF30207.1}; TaxID=558152 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium piperi.;"
putative integral membrane transmembrane protein
SCNpilot_cont_750_bf_scaffold_2526_3
Cystobacter violaceus, Cystobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1037..1642)
DNA (606bp) protein (202aa)
Transcriptional regulator TetR family n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=G0F0W6_CUPNN
TetR family transcriptional regulator {ECO:0000313|EMBL:KFA91545.1}; TaxID=1406225 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Cystobacter.;" source="Cystobacter violaceus Cb vi76.;"
TetR family transcriptional regulator
SCNpilot_cont_750_bf_scaffold_2526_4
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1823..2953
DNA (1131bp) protein (377aa)
NADH:flavin oxidoreductase/NADH oxidase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HWL8_PARL1 rbh
NADH:flavin oxidoreductase rbh
NADH:flavin oxidoreductase/NADH oxidase {ECO:0000313|EMBL:ABS64301.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_cont_750_bf_scaffold_2526_5
Mesorhizobium sp. LSHC426A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3003..3311
DNA (309bp) protein (103aa)
UPI0003CEAC01 related cluster n=1 Tax=unknown RepID=UPI0003CEAC01
Uncharacterized protein {ECO:0000313|EMBL:ESX41984.1}; TaxID=1287298 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC426A00.;"
SCNpilot_cont_750_bf_scaffold_2526_6
GWD2_Desulfuromonadales_54_10_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3342..4352)
DNA (1011bp) protein (337aa)
Abi family protein id=2250709 bin=GWB2_Pelobacter_53_15 species=Citreicella sp. SE45 genus=Citreicella taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWB2_Pelobacter_53_15 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
Tax=GWD2_Desulfuromonadales_54_10_curated
SCNpilot_cont_750_bf_scaffold_2526_7
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4662..6662
DNA (2001bp) protein (667aa)
ParB domain protein nuclease n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SV44_CAUSK
nuclease; K03497 chromosome partitioning protein, ParB family
ParB domain protein nuclease {ECO:0000313|EMBL:ABZ72934.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_750_bf_scaffold_2526_8
Acidomonas methanolica, Acidomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7077..7769
DNA (693bp) protein (231aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=1231351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidomonas.;" source="Acidomonas methanolica NBRC 104435.;"
DNA methylase N-4/N-6 domain protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B7D6_PARDP
DNA methylase N-4/N-6 domain-containing protein
SCNpilot_cont_750_bf_scaffold_2526_9
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8336..8539
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6UD58_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW10839.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_2526_10
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8634..8936)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11FV9_MESSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG63716.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_cont_750_bf_scaffold_2526_11
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9322..10512
DNA (1191bp) protein (397aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SV47_CAUSK rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:ABZ72937.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_750_bf_scaffold_2526_12
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10654..10833)
DNA (180bp) protein (60aa)
Putative transcriptional regulator n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QDZ6_9BRAD
Transcriptional regulator {ECO:0000313|EMBL:KKC25913.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
XRE family transcriptional regulator
SCNpilot_cont_750_bf_scaffold_2526_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11020..11283
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PAN7_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38616.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_2526_14
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11442..11765
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZHF7_GLUDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACI52527.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
SCNpilot_cont_750_bf_scaffold_2526_15
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11716..12228
DNA (513bp) protein (171aa)
UPI0003D03E74 related cluster n=1 Tax=unknown RepID=UPI0003D03E74
Uncharacterized protein {ECO:0000313|EMBL:ESZ86671.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_2526_16
Sphingobium sp. C100, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12644..13120
DNA (477bp) protein (159aa)
UPI0003D679CC related cluster n=1 Tax=unknown RepID=UPI0003D679CC
Uncharacterized protein {ECO:0000313|EMBL:ETI60093.1}; TaxID=1207055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. C100.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_2526_17
Acetobacter tropicalis, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13117..13632
DNA (516bp) protein (172aa)
conjugal transfer protein TraF n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B48199
Type IV secretory pathway, protease TraF {ECO:0000313|EMBL:KGB24760.1}; TaxID=104102 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter tropicalis.;"
traF; conjugal transfer protein traF
SCNpilot_cont_750_bf_scaffold_2526_18
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13836..14456
DNA (621bp) protein (207aa)
soluble lytic murein transglycosylase (EC:3.2.1.-); K01238 [EC:3.2.1.-]
Putative soluble lytic murein transglycosylase {ECO:0000313|EMBL:ABQ39578.1}; EC=3.2.1.- {ECO:0000313|EMBL:ABQ39578.1};; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
Putative soluble lytic murein transglycosylase n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ETT4_BRASB
SCNpilot_cont_750_bf_scaffold_2526_19
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14453..15001
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1AYB1_PARDP rbh
Uncharacterized protein {ECO:0000313|EMBL:KGJ08955.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
hypothetical protein rbh
SCNpilot_cont_750_bf_scaffold_2526_20
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15108..16979
DNA (1872bp) protein (624aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IDB1_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS66004.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_cont_750_bf_scaffold_2526_21
unknown

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comp(16974..17522)
DNA (549bp) protein (183aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_2526_22
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17687..19669
DNA (1983bp) protein (661aa)
TRAG protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20ZK7_RHOPB
Conjugal transfer protein TraG {ECO:0000313|EMBL:KJC55962.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4
SCNpilot_cont_750_bf_scaffold_2526_23
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19672..20091
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IDA9_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS66002.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_cont_750_bf_scaffold_2526_24
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20363..21352
DNA (990bp) protein (330aa)
Conjugative transfer protein TrbB n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RAT9_PELHB rbh
Conjugal transfer protein TrbB {ECO:0000313|EMBL:KJC60354.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
conjugative transfer protein TrbB; K03196 type IV secretion system protein VirB11 rbh
SCNpilot_cont_750_bf_scaffold_2526_25
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21349..21678
DNA (330bp) protein (110aa)
conjugal transfer protein TrbC n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FDE62A
trbC; conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
Conjugal transfer protein TrbC {ECO:0000313|EMBL:CAP54961.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
SCNpilot_cont_750_bf_scaffold_2526_26
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21678..21911
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PJJ4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS38558.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
trbD; conjugal transfer protein TrbD; K03198 type IV secretion system protein VirB3
SCNpilot_cont_750_bf_scaffold_2526_27
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21905..24334
DNA (2430bp) protein (810aa)
Putative uncharacterized protein n=1 Tax=Sphingomonas sp. S17 RepID=F3X046_9SPHN
VirB4 family type IV secretion/conjugal transfer ATPase {ECO:0000313|EMBL:EKS30461.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
conjugal transfer protein TrbE; K03199 type IV secretion system protein VirB4
SCNpilot_cont_750_bf_scaffold_2526_28
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24331..25095
DNA (765bp) protein (255aa)
Putative conjugal transfer protein TrbJ n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q20ZL3_RHOPB
conjugal transfer protein TrbJ
Putative conjugal transfer protein TrbJ {ECO:0000313|EMBL:ABD89423.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_750_bf_scaffold_2526_29
unknown

Not on your lists

25118..25333
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_2526_30
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25337..26686
DNA (1350bp) protein (450aa)
P-type conjugative transfer protein TrbL n=2 Tax=Afipia RepID=K8NPW3_AFIFE
P-type conjugative transfer protein TrbL {ECO:0000313|EMBL:EKS30464.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
Displaying items 1-30 of 31 in total

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