ggKbase home page

SCNpilot_cont_750_bf_scaffold_2547

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_2547_1
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..528
DNA (528bp) protein (176aa)
ABC transporter ATPase component n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IR45_RHOP2
ABC transporter ATPase
ABC transporter ATPase component {ECO:0000313|EMBL:ABD09315.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_750_bf_scaffold_2547_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

525..1250
DNA (726bp) protein (242aa)
ABC transporter related n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13D23_RHOPS
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein
ABC transporter related {ECO:0000313|EMBL:ABE38016.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_750_bf_scaffold_2547_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1279..2427
DNA (1149bp) protein (383aa)
Extracellular ligand-binding receptor n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IR47_RHOP2 rbh
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein rbh
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ABD09313.1}; Flags: Precursor;; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_750_bf_scaffold_2547_4
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2691..3419
DNA (729bp) protein (243aa)
Putative transcriptional regulatory protein, GntR family n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TFT9_9BRAD
Putative transcriptional regulatory protein, GntR family {ECO:0000313|EMBL:CCE05327.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
transcriptional regulator
SCNpilot_cont_750_bf_scaffold_2547_5
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3612..4583
DNA (972bp) protein (324aa)
Putative NADPH quinone oxidoreductase {ECO:0000313|EMBL:CCE10294.1}; EC=1.6.5.5 {ECO:0000313|EMBL:CCE10294.1};; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
NADPH quinone oxidoreductase (EC:1.6.5.5); K00344 NADPH2:quinone reductase [EC:1.6.5.5]
Putative NADPH quinone oxidoreductase n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TV06_9BRAD
SCNpilot_cont_750_bf_scaffold_2547_6
unknown

Not on your lists

comp(4687..5550)
DNA (864bp) protein (288aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_2547_7
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5762..5944
DNA (183bp) protein (61aa)
Cation diffusion facilitator family transporter n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QNC5_NITHX
cation diffusion facilitator family transporter
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:ABE62272.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_2547_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6415..8445
DNA (2031bp) protein (677aa)
multi-sensor signal transduction histidine kinase; K07716 two-component system, cell cycle sensor histidine kinase PleC [EC:2.7.13.3]
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
Multi-sensor signal transduction histidine kinase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q217N0_RHOPB
SCNpilot_cont_750_bf_scaffold_2547_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8442..11408)
DNA (2967bp) protein (989aa)
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015000}; EC=2.7.7.42 {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015004};; Glutamine-synthase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; [Glutamate--ammonia-ligase] adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase; K00982 glutamate-ammonia-ligase adenylyltransferase [EC:2.7.7.42]
Glutamate-ammonia-ligase adenylyltransferase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PUJ2_9BRAD
SCNpilot_cont_750_bf_scaffold_2547_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11405..12847)
DNA (1443bp) protein (481aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
ATP-binding region, ATPase-like n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q139J1_RHOPS
periplasmic sensor signal transduction histidine kinase
SCNpilot_cont_750_bf_scaffold_2547_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12831..13538)
DNA (708bp) protein (236aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IUH2_RHOP2
two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ABD08138.1}; Flags: Precursor;; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_750_bf_scaffold_2547_12
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13709..15190)
DNA (1482bp) protein (494aa)
peptidase S1C, Do; K01362 [EC:3.4.21.-]
Peptidase Do n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H4S3_9BRAD
Peptidase Do {ECO:0000313|EMBL:ERF84797.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
Displaying 12 items

View Taxonomy