ggKbase home page

SCNpilot_cont_750_bf_scaffold_2771

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_2771_1
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..722
DNA (720bp) protein (240aa)
Probable transcriptional regulatory protein Nwi_2729 n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Y2729_NITWN
hypothetical protein
Probable transcriptional regulatory protein Nwi_2729 {ECO:0000255|HAMAP-Rule:MF_00693}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_750_bf_scaffold_2771_2
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1121..2491
DNA (1371bp) protein (457aa)
Magnesium transporter n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QHP4_NITHX
magnesium transporter; K06213 magnesium transporter
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_750_bf_scaffold_2771_3
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2559..4106)
DNA (1548bp) protein (516aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07TS9_RHOP5
hypothetical protein; K09795 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ04655.1}; Flags: Precursor;; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_750_bf_scaffold_2771_4
bacterium YEK0313, Bacteria

Not on your lists

comp(4270..5226)
DNA (957bp) protein (319aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086366}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
dapA; dihydrodipicolinate synthase (EC:4.2.1.52); K01714 dihydrodipicolinate synthase [EC:4.2.1.52]
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6NBD0_RHOPA
SCNpilot_cont_750_bf_scaffold_2771_5
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5577..7019)
DNA (1443bp) protein (481aa)
Lytic murein transglycosylase n=1 Tax=Rhodopseudomonas palustris (strain DX-1) RepID=E6VCI1_RHOPX
Lytic transglycosylase {ECO:0000313|EMBL:KIZ42983.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
lytic murein transglycosylase
SCNpilot_cont_750_bf_scaffold_2771_6
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7407..8093
DNA (687bp) protein (229aa)
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU361259}; EC=2.7.7.9 {ECO:0000256|RuleBase:RU361259};; UDP-glucose pyrophosphorylase {ECO:0000256|RuleBase:RU361259}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
exoN; UTP-glucose-1-phosphate uridylyltransferase; K00963 UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
UTP-glucose-1-phosphate uridylyltransferase n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89UB8_BRADU
SCNpilot_cont_750_bf_scaffold_2771_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8324..9643
DNA (1320bp) protein (440aa)
6-aminohexanoate-dimer hydrolase (EC:3.5.1.46); K01453 [EC:3.5.1.46]
6-aminohexanoate-dimer hydrolase {ECO:0000313|EMBL:ABE38107.1}; EC=3.5.1.46 {ECO:0000313|EMBL:ABE38107.1};; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
6-aminohexanoate-dimer hydrolase n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q13CT2_RHOPS
SCNpilot_cont_750_bf_scaffold_2771_8
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9659..9919
DNA (261bp) protein (87aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI000363E5CA
Uncharacterized protein {ECO:0000313|EMBL:KJC60661.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_2771_9
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10068..10586)
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DDZ5_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL08141.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
SCNpilot_cont_750_bf_scaffold_2771_10
Actinokineospora spheciospongiae, Actinokineospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10883..11932
DNA (1050bp) protein (350aa)
NAD-dependent dehydratase n=1 Tax=Nonomuraea coxensis RepID=UPI00037760CE
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:EWC62342.1}; TaxID=909613 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_2771_11
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12177..13940)
DNA (1764bp) protein (588aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IEM9_9BRAD rbh
Bradyrhizobium elkanii strain UASWS1015 Contig172, whole genome shotgun sequence {ECO:0000313|EMBL:KIU49905.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
flavin-containing monooxygenase
SCNpilot_cont_750_bf_scaffold_2771_12
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14073..14972)
DNA (900bp) protein (300aa)
Transcriptional regulator, LysR family n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Y3P5_9RHIZ rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:EMS41792.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
LysR family transcriptional regulator; K03566 LysR family transcriptional regulator, glycine cleavage system transcriptional activator
SCNpilot_cont_750_bf_scaffold_2771_13
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15792..16172
DNA (381bp) protein (127aa)
Short-chain acyl-CoA dehydrogenase (SCAD)-like protein, putative butyryl-CoA dehydrogenase n=1 Tax=Rhizobium sp. RepID=L0NAU2_RHISP
Butyryl-CoA dehydrogenase {ECO:0000313|EMBL:EJZ35410.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
acyl-CoA dehydrogenase domain-containing protein
SCNpilot_cont_750_bf_scaffold_2771_14
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16662..18167
DNA (1506bp) protein (502aa)
CoA-binding domain-containing protein n=1 Tax=Thauera phenylacetica B4P RepID=N6Z0V9_9RHOO rbh
CoA-binding domain-containing protein {ECO:0000313|EMBL:EJZ35411.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
CoA-binding domain-containing protein rbh
SCNpilot_cont_750_bf_scaffold_2771_15
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18169..18549
DNA (381bp) protein (127aa)
Branched-chain amino acid transport system permease n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1HK28_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EJZ35412.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_2771_16
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18546..19415
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002F4AB61 rbh
Bradyrhizobium elkanii strain UASWS1015 Contig187, whole genome shotgun sequence {ECO:0000313|EMBL:KIU43377.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
alpha/beta hydrolase rbh
SCNpilot_cont_750_bf_scaffold_2771_17
Bradyrhizobium sp. S23321, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19577..20524
DNA (948bp) protein (316aa)
Putative ABC transporter substrate-binding protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GDR7_9BRAD
putative ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:BAL78904.1}; TaxID=335659 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. S23321.;"
SCNpilot_cont_750_bf_scaffold_2771_18
Achromobacter arsenitoxydans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20592..21485
DNA (894bp) protein (298aa)
glxR; 2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60) rbh
2-hydroxy-3-oxopropionate reductase n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0F4R5_9BURK rbh
2-hydroxy-3-oxopropionate reductase {ECO:0000313|EMBL:EHK66716.1}; TaxID=477184 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter arsenitoxydans SY8.;"
SCNpilot_cont_750_bf_scaffold_2771_19
Amycolatopsis mediterranei, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21490..22896
DNA (1407bp) protein (469aa)
2-methylcitrate dehydratase n=3 Tax=Amycolatopsis mediterranei RepID=D8HNN0_AMYMU rbh
prpD; 2-methylcitrate dehydratase rbh
2-methylcitrate dehydratase {ECO:0000313|EMBL:AEK42401.1}; TaxID=713604 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis mediterranei (strain S699) (Nocardia mediterranei).;"
SCNpilot_cont_750_bf_scaffold_2771_20
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23026..24453
DNA (1428bp) protein (476aa)
gabD1; succinate-semialdehyde dehydrogenase [NADP+] 1 (EC:1.2.1.16); K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16] rbh
Succinate-semialdehyde dehydrogenase [NADP+] 1 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HFP9_ACHXA rbh
Aldehyde dehydrogenase {ECO:0000313|EMBL:KJR63103.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
SCNpilot_cont_750_bf_scaffold_2771_21
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24825..25658
DNA (834bp) protein (278aa)
Aldehyde dehydrogenase (NAD) family protein {ECO:0000313|EMBL:KCB34932.1}; EC=1.2.1.- {ECO:0000313|EMBL:KCB34932.1};; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 8-296-03.;"
betaine aldehyde dehydrogenase (badh) (EC:1.2.1.8)
Betaine aldehyde dehydrogenase BetB n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0F695_9BURK
SCNpilot_cont_750_bf_scaffold_2771_22
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25676..26203
DNA (528bp) protein (176aa)
betaine aldehyde dehydrogenase (badh) (EC:1.2.1.8)
Betaine aldehyde dehydrogenase BetB {ECO:0000313|EMBL:AEI07656.1}; EC=1.2.1.8 {ECO:0000313|EMBL:AEI07656.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Betaine aldehyde dehydrogenase (Badh) n=2 Tax=Oligotropha carboxidovorans RepID=B6JBR2_OLICO
SCNpilot_cont_750_bf_scaffold_2771_23
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26434..26586
DNA (153bp) protein (51aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GDR9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EJZ30791.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_2771_24
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26583..27338
DNA (756bp) protein (252aa)
Putative carboxylesterase protein n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0GDR8_9BRAD
Putative carboxylesterase protein {ECO:0000313|EMBL:EJZ30790.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
putative carboxylesterase protein
Displaying 24 items

View Taxonomy